View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19819_high_2 (Length: 419)
Name: NF19819_high_2
Description: NF19819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19819_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 64 - 402
Target Start/End: Original strand, 4689783 - 4690121
Alignment:
| Q |
64 |
ttggagttggagaaaagtgacaaaactaattaatacttgaagaaccaacgcatggcgtaaatgaaaaggcaacattaagaaacaaacaagggaatggaaa |
163 |
Q |
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| T |
4689783 |
ttggtgttggagaaaagtgacaaaactaattaatacttgaagaaccaacgcatggcgtaaatgaaaaggcaacattaagaaacaaacaaggaaatggaaa |
4689882 |
T |
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| Q |
164 |
tgaagacaaatgtgtgagtgttgtattcactgaaaaccaatgaatgaatcatgcaccaaattagaaagaagacaaagatatagtaaaaataaaataaagt |
263 |
Q |
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| T |
4689883 |
tgaagacaaatgtgtgagtgttgtattcactgaaaaccaatgaatgaatcatgcaccaaattagaaagaagacaaagatatagtaaaaataaaataaagt |
4689982 |
T |
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| Q |
264 |
aaacctggaatgtcactgtagactgtgcttctctccttaaaaagctggtctttacattgggcaccgacgcatgaatcatacacgacagtgattcccacat |
363 |
Q |
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| T |
4689983 |
aaacctggaatgtcactgtagactgtgcttccctccttaaaaagctggtctttacattgggcaccgacgcatgaatcatacacgacagtgattcccacat |
4690082 |
T |
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| Q |
364 |
gttcagactcagtgaatcacccacaaacattatcttctt |
402 |
Q |
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| T |
4690083 |
gttcagactcagtgaatcacccacaaacattatcttctt |
4690121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 317 - 402
Target Start/End: Complemental strand, 34506077 - 34505992
Alignment:
| Q |
317 |
acattgggcaccgacgcatgaatcatacacgacagtgattcccacatgttcagactcagtgaatcacccacaaacattatcttctt |
402 |
Q |
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| T |
34506077 |
acattcggaaccgacgcatgaatcatacaagacaatgattcccacatgtttagactcaatgaatcacccacaaacattatcttctt |
34505992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 34516198 - 34516125
Alignment:
| Q |
326 |
accgacgcatgaatcatacacgacagtgattcccacatgttcagactcagtgaatcacccacaaacattatctt |
399 |
Q |
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||||| |||||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
34516198 |
accgatgcatgaatcatacaagacaatgattcccacatgtttagactcaatgaatcacccacaaacattatctt |
34516125 |
T |
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