View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19819_low_1 (Length: 576)
Name: NF19819_low_1
Description: NF19819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19819_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 15 - 548
Target Start/End: Complemental strand, 28532239 - 28531707
Alignment:
| Q |
15 |
agcaacctcagatagtaagatggcgtataaacagaaatcaattaccaaaaatactgtttgactctacacaacaggaaaataaaaaagaaatttcgcatca |
114 |
Q |
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| T |
28532239 |
agcaacctcagatagtaagatgacgtataaacagaaatcaattaccaaaaatactgtttgactctacacaacaggaaaagaaaaaagaaatttcgcatca |
28532140 |
T |
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| Q |
115 |
agctttgtcctacccatttccaccaaaaaatggaagtaccaaaccaactttaacacacaaatccttggacactcaagatttatcttattttaaacaaacn |
214 |
Q |
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| T |
28532139 |
agctttgtcctacccatttccaccaaaaaatggaagtaccaaaccaactttaacacacaaatccttggacactcaagatttatcttattttaaacaaaca |
28532040 |
T |
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| Q |
215 |
nnnnnncatttttatgtggaatgattgtttaaatagtttatattgaatgttcagtgacaaaatatggatgtattgtttattctgcatggcaaatggaagt |
314 |
Q |
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| T |
28532039 |
aaaaaacatttttatgtggaatgattgtttaaatagtttatattgaatgttcagtgacaaaatatggatgtattgtttattctgcatggcaaatggaagt |
28531940 |
T |
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| Q |
315 |
ataccagacaaattgcacaagttccttcttgactttgctcagctgaacaatacaaagtttttgtcaaatacttagaaatcaaaccctcagataatcctgt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28531939 |
ataccagacaaattgcacaagttccttcttgactttgctcagctgaacaatacaatgtttttgtcaaatacttagaaatcaaaccctcagataatcctgt |
28531840 |
T |
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| Q |
415 |
gccgacattgccgatcctttctccaagtgcaagtagttcctggtcgatcaaagcatccaaatccaaataataaacaaatattagaaagaaatatcattta |
514 |
Q |
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| T |
28531839 |
gccgacattgccgatcctttctccaagtgcaagtagttcctggttgattaaagcatccaaatccaaataataaacaaatattagaaagaaatatca-tta |
28531741 |
T |
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| Q |
515 |
attataatttataacacatgaaacaaaactcttc |
548 |
Q |
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| T |
28531740 |
attataatttataacacatgaaacaaaactcttc |
28531707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 315 - 476
Target Start/End: Complemental strand, 28546133 - 28545972
Alignment:
| Q |
315 |
ataccagacaaattgcacaagttccttcttgactttgctcagctgaacaatacaaagtttttgtcaaatacttagaaatcaaaccctcagataatcctgt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28546133 |
ataccagacaaattgcacaagttccttcttgactttgctcagctgaacagtacagtgtttttgtcaaatacttagaaatcaaactctcagataatcctgt |
28546034 |
T |
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| Q |
415 |
gccgacattgccgatcctttctccaagtgcaagtagttcctggtcgatcaaagcatccaaat |
476 |
Q |
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| T |
28546033 |
attcacatagccgatcctctctccaagtgcaagtagttcctggtcgatcaaagcatccaaat |
28545972 |
T |
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Back To:
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