View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19819_low_3 (Length: 281)
Name: NF19819_low_3
Description: NF19819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19819_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 19993177 - 19993441
Alignment:
| Q |
15 |
aaacacaactccaaaactatacacatctgattttgtactaagctgccctgttgatgcatactcaggagcacaatagccataagttcccatcactctggtg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19993177 |
aaacacaactccaaaactatacacatctgattttgtactaagctgccctgttgatgcatactcaggagcacaatagccataagttcccatcactctggtg |
19993276 |
T |
|
| Q |
115 |
gatacatgttctttctcaccagtcgggccaagctttgcaagtccaaaatcagaaagttttggattgtagttttcatctaatagtatgtttgatgctttga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19993277 |
gatacatgttctttctcaccagtcgggccaagctttgcaagtccaaaatcagaaagctttggattgtagttttcatctaatagtatgtttgatgctttga |
19993376 |
T |
|
| Q |
215 |
aatcgcgatatatcaccggagggtttgcttcttcgtgtaaatattcaagcccctttgctactcct |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
19993377 |
aatcgcgatatatcaccggagggtttgcttcttcgtgtaaatattcaagcccttttgctgctcct |
19993441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 40225109 - 40225357
Alignment:
| Q |
15 |
aaacacaactccaaaactatacacatctgattttgtactaagctgccctgttgatgcatactcaggagcacaatagccataagttcccatcactctggtg |
114 |
Q |
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|||||| |||||||| ||||| |||||||| ||||| | | || |||||||| ||||||||||| |||||||||||||||||||||||||| || ||| |
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| T |
40225109 |
aaacaccactccaaagctataaacatctgaccttgtagtcaattgacctgttgaggcatactcaggtgcacaatagccataagttcccatcaccctagtg |
40225208 |
T |
|
| Q |
115 |
gatacatgttctttctcaccagtcgggccaagctttgcaagtccaaaatcagaaagttttggattgtagttttcatctaatagtatgtttgatgctttga |
214 |
Q |
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| T |
40225209 |
gacacgtgtgttttatctccagttggaccaagctttgcaagtccaaaatcagagagttttggattgaaattttcatccaagagtatgtttgatgctttga |
40225308 |
T |
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| Q |
215 |
aatcgcgatatatcaccggagggtttgcttcttcgtgtaaatattcaag |
263 |
Q |
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|||| |||||||||||||| || ||||||||| ||||||| |||||||| |
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| T |
40225309 |
aatcacgatatatcaccggtggctttgcttctgcgtgtaagtattcaag |
40225357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 7945933 - 7945851
Alignment:
| Q |
151 |
gcaagtccaaaatcagaaagttttggattgtagttttcatctaatagtatgtttgatgctttgaaatcgcgatatatcaccgg |
233 |
Q |
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||||| |||||||||||||| ||||||||| | |||||||| |||||||| || || | ||| ||||| ||| | |||||||| |
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| T |
7945933 |
gcaagaccaaaatcagaaagctttggattgaaattttcatccaatagtatattagacgattttaaatcacgaaaaatcaccgg |
7945851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 40466212 - 40466264
Alignment:
| Q |
70 |
gcatactcaggagcacaatagccataagttcccatcactctggtggatacatg |
122 |
Q |
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|||||||| ||||||||||| ||||| |||||||| ||||| || |||||||| |
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| T |
40466212 |
gcatactctggagcacaatatccataggttcccataactcttgtcgatacatg |
40466264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 10979488 - 10979528
Alignment:
| Q |
151 |
gcaagtccaaaatcagaaagttttggattgtagttttcatc |
191 |
Q |
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||||||||||||||||||| |||||||||| | |||||||| |
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| T |
10979488 |
gcaagtccaaaatcagaaacttttggattgaaattttcatc |
10979528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 11007892 - 11007932
Alignment:
| Q |
151 |
gcaagtccaaaatcagaaagttttggattgtagttttcatc |
191 |
Q |
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||||||||||||||||||| |||||||||| | |||||||| |
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| T |
11007892 |
gcaagtccaaaatcagaaacttttggattgaaattttcatc |
11007932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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