View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1981_high_2 (Length: 318)
Name: NF1981_high_2
Description: NF1981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1981_high_2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 5447116 - 5446805
Alignment:
| Q |
9 |
acatcatcacaacgtaattataacaattcttgcattattgcataaccattagtttctctaggatagaaattaagcataaactagac--gagaatttcata |
106 |
Q |
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| T |
5447116 |
acatcatcacaacgtaattataacaattcttgcattattgcataaccattagtttctctaggatagaaattaagcataaactagacaagagaatttcata |
5447017 |
T |
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| Q |
107 |
gacactaattgattaacaaagctcaaacaattttacattgcttcacactcaagaaacttgttcttaaatcttttgcctagcatcacaattagagaaactt |
206 |
Q |
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| T |
5447016 |
gacactaattgattaacaaagttcaaacaattttacattgcttcacactcaagaaacttgttcttaaatcttttacctagcatcacaattagagaaactt |
5446917 |
T |
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| Q |
207 |
catactattttccaactcctgcttcttgaattcaaactcatcaatttctgccaattggtttctgtcaaaccattctatactttcctcccctaccttctca |
306 |
Q |
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| T |
5446916 |
catactattttccaactcctgcttcttgaattcaaactcatcaatttctgccaattggtttctttcaaaccattctatactttcctccactaccttctca |
5446817 |
T |
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| Q |
307 |
agtttcttcact |
318 |
Q |
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| T |
5446816 |
agtttcttcact |
5446805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 5431986 - 5432040
Alignment:
| Q |
102 |
tcatagacactaattgattaacaaagctcaaacaattttacattgcttcacactc |
156 |
Q |
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| T |
5431986 |
tcatagacactaattgagtaatgaagctcaaactattttacattgcttcagactc |
5432040 |
T |
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