View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1981_high_4 (Length: 265)
Name: NF1981_high_4
Description: NF1981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1981_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 39584251 - 39584005
Alignment:
| Q |
1 |
ttctcaactatggagtgacccaacacaattcaagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggct |
100 |
Q |
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| T |
39584251 |
ttctcaactatggagtgacccaacacaattcaagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggct |
39584152 |
T |
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| Q |
101 |
tgtcctggagcaaacttagggcaacgtacagttagtttaactttggcattacttatacaatgttttgattggaaaagaataaatgaggaagaaattgata |
200 |
Q |
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| T |
39584151 |
tgtcctggagcaaacttagggcaacgtacagttagtttaactttggcattacttatccaatgttttgattggaaaagaataagtgaggaagaaattgata |
39584052 |
T |
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| Q |
201 |
tgactgaaggaaaaggagccactactccgaagttaattcccttggag |
247 |
Q |
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| T |
39584051 |
tgactgaaggaaaaggagccactactccgaagctaattcccttggag |
39584005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 12151563 - 12151489
Alignment:
| Q |
35 |
ccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctgga |
109 |
Q |
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| T |
12151563 |
ccagagagatttgaaaaagaaggtgaggtaaataagttaattgcatttggttttggaagaagggcttgtcctgga |
12151489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 38974843 - 38974762
Alignment:
| Q |
29 |
ttcaagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctggag |
110 |
Q |
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| T |
38974843 |
ttcaagcctgagaggtttgagaaagaaggagagttagacaagttgattgcatttgggttaggaagaagggcttgtccaggag |
38974762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 39572713 - 39572633
Alignment:
| Q |
161 |
tgttttgattggaaaagaataaatgaggaagaaattgatatgactgaaggaaaaggagccactactccgaagttaattccctt |
243 |
Q |
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| T |
39572713 |
tgtttcgattggaaaataataagtgagaaagaaattg--atgagttaaggaaaaggagtcactactccaaagccaattccctt |
39572633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 38931689 - 38931612
Alignment:
| Q |
32 |
aagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctgga |
109 |
Q |
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| T |
38931689 |
aagccagagagatttgaaaaagaaggggaagcaaacaagttaattgcatttggttttggaaggaggggttgccctgga |
38931612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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