View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1981_low_11 (Length: 238)
Name: NF1981_low_11
Description: NF1981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1981_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 10870671 - 10870833
Alignment:
| Q |
20 |
aaccaccatttctctatatattcatggcggtgaagtaataatagcatatctattcctaatccgcttaatatatttcatccaaatggctcttatcaaaatt |
119 |
Q |
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| T |
10870671 |
aaccaccatttctctatatattcatcatggtgaagtaataatagcatatctattcctaatccgcttaatccattttatccaaacgactcttatcaaaatt |
10870770 |
T |
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| Q |
120 |
ctatatctttttgcgattttaactgaaa-gggaatcaccaaccaggatcagatacaaatcctt |
181 |
Q |
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| T |
10870771 |
ctaaatctttttgtgattttaagtgaaaggggaatcaccaaccaggatcagatacaaatcctt |
10870833 |
T |
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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 47694487 - 47694390
Alignment:
| Q |
20 |
aaccaccatttctctatatattcatggcggtgaagtaataatagcatatctattcctaatccgcttaatatatttcatccaaatggctcttatcaaaatt |
119 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
47694487 |
aaccaccatttctctatatattcatgg---tgaagtaataatagcatatctattcctaatccgcttaagctatttcatccaaatgactcttatcaaaatt |
47694391 |
T |
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