View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1981_low_2 (Length: 410)
Name: NF1981_low_2
Description: NF1981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1981_low_2 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 270006 - 270390
Alignment:
| Q |
18 |
accttcacacttcacaaagaaagagtccaatcatgtttacctctaagtagacttcacatatttttccacttcatatgtgtcttgtttctcttttactatc |
117 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
270006 |
accttcacacttcacaaagaaacagtccaatcatgtttacctctaagtagacttcacatatttttccacttcatatgtgtcttgtttctcttttattatc |
270105 |
T |
|
| Q |
118 |
gtatcaacaatttcattatatcatatccatggattctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcataccgatggcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270106 |
gtatcaacaatttcattatatcatatccatggattctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcataccgatggcg |
270205 |
T |
|
| Q |
218 |
tccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaaaaagaacca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270206 |
gccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaaaaagaacca |
270305 |
T |
|
| Q |
318 |
acggttgaagttatgaacactgttgtttctgctattgcaatggattacccttctaataagctttctatttatctttctgatgatg |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
270306 |
acggttgaagttatgaacactgttgtttctgctattgcaatggattacccttctaataagctttctatttatctttctgatgatg |
270390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 17589370 - 17588986
Alignment:
| Q |
18 |
accttcacacttcacaaagaaagagtccaatcatgtttacctctaagtagacttcacatatttttccacttcatatgtgtcttgtttctcttttactatc |
117 |
Q |
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|
|||||||| ||||||||||||| || |||||||| ||||||||| |||| ||||||| | |||||||||||||| | ||||||||||||||||| | |
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| T |
17589370 |
accttcacccttcacaaagaaaccgttcaatcatggttacctctacatagaactcacatagtcttccacttcatatgcattttgtttctcttttactacc |
17589271 |
T |
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| Q |
118 |
gtatcaacaatttcattatatcatatccatggattctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcataccgatggcg |
217 |
Q |
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||||||| ||||| |||| |||||||||||| ||||||||||| |||||||| ||||||||||| | ||||| ||||||||||||| | ||| ||||| |
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| T |
17589270 |
gtatcaaaaatttatttatttcatatccatggcttctaatgacattagctgagattattctatcatttatgtgggttttcaaccaagcgttccgttggcg |
17589171 |
T |
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| Q |
218 |
tccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaaaaagaacca |
317 |
Q |
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||||||| ||| || || ||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17589170 |
gccggtgactcgttcagtgatgaccgagaaattaccggctgaagagaagttaccgggactcgacatatttgtgtgtacgattgatcctgaaaaagaacca |
17589071 |
T |
|
| Q |
318 |
acggttgaagttatgaacactgttgtttctgctattgcaatggattacccttctaataagctttctatttatctttctgatgatg |
402 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||||||||| || |||| ||||||||||||||||||||||||| |
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| T |
17589070 |
acggtagaagttatgaacactgttgtttctgctattgctatggattaccctcctgataaactttctatttatctttctgatgatg |
17588986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 11615 - 11999
Alignment:
| Q |
18 |
accttcacacttcacaaagaaagagtccaatcatgtttacctctaagtagacttcacatatttttccacttcatatgtgtcttgtttctcttttactatc |
117 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| |||| ||||||||||| ||| | ||||| | |||||||||| |||||||||||||||||||||||| | |
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| T |
11615 |
accttcacacttcacaaagaaacagttcaaccatggttacctctaagaagagcttacataatcttccacttcacatgtgtcttgtttctcttttactacc |
11714 |
T |
|
| Q |
118 |
gtatcaacaatttcattatatcatatccatggattctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcataccgatggcg |
217 |
Q |
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|
|||||| |||||| |||| |||||||||||| ||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||| ||| ||| | |
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| T |
11715 |
gtatcagcaatttgtttatttcatatccatggtttctaatgacaatagctgagattattctatcatttttgtggtttttcaaccaagcattccgttggag |
11814 |
T |
|
| Q |
218 |
tccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaaaaagaacca |
317 |
Q |
| |
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| ||| | ||| || || ||| ||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11815 |
gctggtaaatcgttcagttatgaccgagaaattaccgcccgacgagaagttaccgggactcgacatatttgtgtgtacgattgatcctgaaaaagaacca |
11914 |
T |
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| Q |
318 |
acggttgaagttatgaacactgttgtttctgctattgcaatggattacccttctaataagctttctatttatctttctgatgatg |
402 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
11915 |
acggttgatgttatgaacactgttatttctgctattgcaatggactacccttctaataaactttctatttatctttctgatgatg |
11999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 16386218 - 16385834
Alignment:
| Q |
18 |
accttcacacttcacaaagaaagagtccaatcatgtttacctctaagtagacttcacatatttttccacttcatatgtgtcttgtttctcttttactatc |
117 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| ||||||||||| ||| ||||||| | ||||||||||||||||||||||||||| ||||||| | |
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| T |
16386218 |
accttcacacttcacaaagaaacagttcaatcatggttacctctaagcagaactcacataatcttccacttcatatgtgtcttgtttctcatttactacc |
16386119 |
T |
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| Q |
118 |
gtatcaacaatttcattatatcatatccatggattctaatgacactagctgagcttattctatcagtcttgtggtttttcaaccaagcataccgatggcg |
217 |
Q |
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|
||||||| ||||| | || |||||||||||| |||||||||||||||||||||||||| | ||| | ||||||||| | ||||||||| ||| ||||| |
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| T |
16386118 |
gtatcaataatttattcatttcatatccatggtttctaatgacactagctgagcttattttttcatttatgtggttttcccaccaagcattccgttggcg |
16386019 |
T |
|
| Q |
218 |
tccggtgagtcgatcggtaatggtcgagaaattaccggctgacgagaagttaccgggactcgacatatttgtatgtacgattgatcctgaaaaagaacca |
317 |
Q |
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||| | | |||||| || ||| |||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
16386018 |
gccgataactcgatcagttatgaccgagaatttaccggccgacgagaagttaccgggactcgacatatttgtgtgtacaattgatcctgaaaaagaacca |
16385919 |
T |
|
| Q |
318 |
acggttgaagttatgaacactgttgtttctgctattgcaatggattacccttctaataagctttctatttatctttctgatgatg |
402 |
Q |
| |
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|| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
16385918 |
actattgatgttatgaacactgttgtttctgctattgcaatggattacccttgtaataaactttctatttatctttctgatgatg |
16385834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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