View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1981_low_3 (Length: 372)
Name: NF1981_low_3
Description: NF1981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1981_low_3 |
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| [»] scaffold0111 (1 HSPs) |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 13581090 - 13581455
Alignment:
| Q |
1 |
tcatcatgggcatctgaggatggatgtgtcacaagtgcaccctgaatccagggaacctccaactccttccgtgattatggactaacttgttccacatcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13581090 |
tcatcatgggcatctgaggatggatgtgtcacaagtgcaccctgaatccgggga-cctccaactccttccgtgattatggactaactcgttccacatcat |
13581188 |
T |
|
| Q |
101 |
ccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatctcatcagacacacaagg |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13581189 |
ccgaaagcacgccagcgtgcacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatctcatcagacacgcaagg |
13581288 |
T |
|
| Q |
201 |
atgtgtttgtgtttgtgttggagccgcagtgatggcaacatcataagcaacaattatttgttgtggctccgtaagtgctgaaaatgcattggatgaacct |
300 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13581289 |
atgtgtctgtgtttgtgttggagccgcagtggtggcaacatcataagcaacaattatttgttgtggctctataagtgctgaaaatgcattggatgaacct |
13581388 |
T |
|
| Q |
301 |
ataccgggaggattctcttttgtaggcacccactgaattttcttgactggaatctgcgccttcccct |
367 |
Q |
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| T |
13581389 |
ataccgggaggattctcttttgtaggcacccactgaattttcttgactggaatttgcgccttcccct |
13581455 |
T |
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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 9284453 - 9284263
Alignment:
| Q |
1 |
tcatcatgggcatctgaggatggatgtgtcacaagtgcaccctgaatccagggaacctccaactccttccgtgattatggactaacttgttccacatcat |
100 |
Q |
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||||||||||||| ||||||||||||| ||||| ||||| | || |||| ||| ||| |||||||| ||| |||| | | | |||||||||||||||| |
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| T |
9284453 |
tcatcatgggcatttgaggatggatgtatcacaggtgcatcgtggatccggggtaccaccaactccccccgcgattctaaatttacttgttccacatcat |
9284354 |
T |
|
| Q |
101 |
ccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatctcatcagacac |
194 |
Q |
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| T |
9284353 |
ccgaaagcacgtcaatgtgcacatcatcag---gggaagctaactccaaaactaggtgcgaaggcaaagagccttgagggatctcatcagacac |
9284263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 38500923 - 38500984
Alignment:
| Q |
271 |
gtaagtgctgaaaatgcattggatgaacctataccgggaggattctcttttgtaggcaccca |
332 |
Q |
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| T |
38500923 |
gtaagtgctgcaaatgctttggatgaacctataccagatggattttctttcgtagacaccca |
38500984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 20951570 - 20951455
Alignment:
| Q |
16 |
gaggatggatgtgtcacaagtgcaccctgaatccagggaacctccaactccttccgtgattatggactaacttgttccacatcatccgaaagcacgccag |
115 |
Q |
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|||||||||| |||| || ||||| |||||||| | ||| ||||||||||| ||||| || || | |||| |||||||||||||||||||||||| || |
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| T |
20951570 |
gaggatggatatgtctcatgtgcattctgaatccggagaatctccaactcctcccgtggttctgaattaacatgttccacatcatccgaaagcacgtcat |
20951471 |
T |
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| Q |
116 |
cgtacacatcatcaac |
131 |
Q |
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||| |||||||||||| |
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| T |
20951470 |
cgttcacatcatcaac |
20951455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 10288102 - 10288211
Alignment:
| Q |
85 |
acttgttccacatcatccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatct |
184 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| || ||||| || |||||| ||||||||| | ||||| ||||| ||||| ||||| || |||| |
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| T |
10288102 |
acttgttccacatcatccgaaagcatgacagcgtgcaaatcat---caggggaagctaactccaatattgggcgtgaaggcaaagagccttgggggatct |
10288198 |
T |
|
| Q |
185 |
catcagacacaca |
197 |
Q |
| |
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| ||||||||||| |
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|
| T |
10288199 |
cctcagacacaca |
10288211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 10303819 - 10303927
Alignment:
| Q |
85 |
acttgttccacatcatccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatct |
184 |
Q |
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||||||||||||| |||| |||||||| |||||| |||||||||| |||||| ||||||||| || ||| || |||| ||||| ||||| || |||| |
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| T |
10303819 |
acttgttccacat-atccaaaagcacgacagcgtgcacatcatcag---gggaagctaactccaatactgggtgcaaaggcaaagagccttgggggatct |
10303914 |
T |
|
| Q |
185 |
catcagacacaca |
197 |
Q |
| |
|
| ||||||||||| |
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| T |
10303915 |
cctcagacacaca |
10303927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 190
Target Start/End: Original strand, 21492631 - 21492761
Alignment:
| Q |
57 |
ctccaactccttccgtgattatggactaacttgttccacatcatccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacgggg |
156 |
Q |
| |
|
||||||||||| |||||||| || | |||||||||||||||||||||||||||| || ||| |||||||| ||||||||| |||||||||||| ||| |
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| T |
21492631 |
ctccaactcctcccgtgattctgaataaacttgttccacatcatccgaaagcacgtcatcgtgcacatcat---caagggaagctaactccaacacaggg |
21492727 |
T |
|
| Q |
157 |
cgcgaaggtaaagaaccttgaggaatctcatcag |
190 |
Q |
| |
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| ||| || || | ||||| || |||||||||| |
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| T |
21492728 |
ctcgacggcaatgttccttgggggatctcatcag |
21492761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 33065794 - 33065900
Alignment:
| Q |
85 |
acttgttccacatcatccgaaagcacgccagcgtacacatcatcaacaagggaagttaactccaacacggggcgcgaaggtaaagaaccttgaggaatct |
184 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| |||||||||| |||||| ||||||| |||| ||||||||||| ||||| ||||| || |||| |
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| T |
33065794 |
acttgttccacggcatccgaaagcacgtcagcgtgcacatcatcag---gggaagctaactccgacactgggcgcgaaggcaaagatccttgggggatct |
33065890 |
T |
|
| Q |
185 |
catcagacac |
194 |
Q |
| |
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| |||||||| |
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|
| T |
33065891 |
cctcagacac |
33065900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 29042380 - 29042254
Alignment:
| Q |
5 |
catgggcatctgaggatggatgtgtcacaagtgcaccctgaatccagggaacctccaactccttccgtgattatggactaacttgttccacatcatccga |
104 |
Q |
| |
|
|||||||||| |||||||||| |||| || ||||| |||||| | ||||| ||||||||||| ||||| || | | |||| ||||||||||||||||| |
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| T |
29042380 |
catgggcatccgaggatggatttgtctcatgtgcattctgaattcggggaatctccaactcctcccgtggttccgaattaacatgttccacatcatccga |
29042281 |
T |
|
| Q |
105 |
aagcacgccagcgtacacatcatcaac |
131 |
Q |
| |
|
||||||| || || |||||||||||| |
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|
| T |
29042280 |
aagcacgtcattgtgcacatcatcaac |
29042254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 13330304 - 13330387
Alignment:
| Q |
28 |
gtcacaagtgcaccctgaatccagggaacctccaactccttccgtgattat-ggactaacttgttccacatcatccgaaagcacg |
111 |
Q |
| |
|
|||||||||||| ||||||||| ||||| ||||||||||| || ||||| ||||| || |||||| || |||||||||||||| |
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|
| T |
13330304 |
gtcacaagtgcatcctgaatccggggaatctccaactcctcccaa-attatcggacttacatgttcctcaacatccgaaagcacg |
13330387 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 231
Target Start/End: Original strand, 46049 - 46232
Alignment:
| Q |
45 |
aatccagggaacctccaactccttccgtgattatggactaacttgttccacatcatccgaaagcacgccagcgtacacatcatcaacaagggaagttaac |
144 |
Q |
| |
|
||||||||| | ||||||||||| |||||||| || | ||||||||||||||||||| |||||||| || ||| || |||| ||||||||| |||| |
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|
| T |
46049 |
aatccagggtatctccaactcctcccgtgattctgaataaacttgttccacatcatccaaaagcacgtcatcgtgca---catcggcaagggaagctaac |
46145 |
T |
|
| Q |
145 |
tccaacacggggcgcgaaggtaaagaaccttgaggaatctcatcagacacacaaggatgtgtttgtgtttgtgttggagccgcagtg |
231 |
Q |
| |
|
|||||||| |||| ||| | || | |||| || ||||||||||||||||| || ||||||| | ||||||||||||||||| |
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|
| T |
46146 |
tccaacacagggctcgacgtcaatgtttcttgggggatctcatcagacacacaggggggtgtttgagcaagtgttggagccgcagtg |
46232 |
T |
|
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Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 4459 - 4516
Alignment:
| Q |
275 |
gtgctgaaaatgcattggatgaacctataccgggaggattctcttttgtaggcaccca |
332 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| | ||||| |||||||||| |||||| |
|
|
| T |
4459 |
gtgctgcaaatgctttggatgaacctataccagatggattttcttttgtagacaccca |
4516 |
T |
|
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