View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1981_low_5 (Length: 308)
Name: NF1981_low_5
Description: NF1981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1981_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 165 - 277
Target Start/End: Complemental strand, 21373726 - 21373614
Alignment:
| Q |
165 |
tgcttaaagtaattttgcctagaaagagctcaatgtgacgaatattgttgacaaagtcaaaattcattttgtatggtagattaaactttaaagcgaaatc |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21373726 |
tgcttaaagtaattttgcctagaaagagctcaatgtgacgaatattgttgacaaagtcaaaattcattttgtatggtagattaaactttaaagcgaaatc |
21373627 |
T |
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| Q |
265 |
tcatggttttaaa |
277 |
Q |
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||||||||||||| |
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| T |
21373626 |
tcatggttttaaa |
21373614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 21373885 - 21373756
Alignment:
| Q |
1 |
agaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatagcaaaaactctct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||| |||||||||||| |
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| T |
21373885 |
agaaaatttattcactttgcctcttgcgatattagcagaagacatgaatctaaatttttgaatattaactttcaacccaaaagcatgacaaaaactctct |
21373786 |
T |
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| Q |
101 |
aacacctctttcactattctaggttgggag |
130 |
Q |
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| T |
21373785 |
aacacctctttcactattctagcttgggag |
21373756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 36253148 - 36253228
Alignment:
| Q |
40 |
agacctgaatctaaatttttgaatattaactttaaacccagaagcatagcaaaaactctctaacacctctttcactattcta |
121 |
Q |
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|||| |||||||| ||||||||||||||||||| || |||||||||| |||||||| |||| ||||||||||| ||||||| |
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| T |
36253148 |
agacatgaatctagatttttgaatattaacttttaa-ccagaagcatgacaaaaactttctaccacctctttcaatattcta |
36253228 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 54873749 - 54873628
Alignment:
| Q |
1 |
agaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatagcaaaaactctct |
100 |
Q |
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|
|||||||||||||||||||| ||| | |||||||||||||||| |||||||| || |||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
54873749 |
agaaaatttattcactttgcttctagagatattagcagaagacatgaatctagatatttgaatattaactttcaacccagaagcatgacaaaaactctct |
54873650 |
T |
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| Q |
101 |
aacacctctttcactattctag |
122 |
Q |
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|| ||||||||||||||||||| |
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| T |
54873649 |
aatacctctttcactattctag |
54873628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 55429837 - 55429958
Alignment:
| Q |
1 |
agaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatagcaaaaactctct |
100 |
Q |
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|
|||||||||||||||||||| ||| | |||||||||| |||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||||| | |
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| T |
55429837 |
agaaaatttattcactttgcttctagagatattagcataagatatgaatctagatttttgaatattaacttttaacccagaagcatgacaaaaactcttt |
55429936 |
T |
|
| Q |
101 |
aacacctctttcactattctag |
122 |
Q |
| |
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|| ||||||||||||||||||| |
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|
| T |
55429937 |
aagacctctttcactattctag |
55429958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 40584010 - 40583947
Alignment:
| Q |
55 |
tttttgaatattaactttaaacccagaagcatagcaaaaactctctaacacctctttcactatt |
118 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| |||||||| ||||||| |||||||| |||| |
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| T |
40584010 |
tttttgaatattaacttttaaccgagaagcattacaaaaactatctaacatctctttcattatt |
40583947 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 7020822 - 7020703
Alignment:
| Q |
1 |
agaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatagcaaaaactctct |
100 |
Q |
| |
|
||||||||||||||||||| |||| | |||||||||||||||| |||||||| |||| |||||||||||||| ||||||||||||| ||||||||||| |
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| T |
7020822 |
agaaaatttattcactttgtctctggagatattagcagaagacatgaatctagatttctgaatattaactttcaacccagaagcatgacaaaaactctc- |
7020724 |
T |
|
| Q |
101 |
aacacctctttcactattctag |
122 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
7020723 |
-acacctctttcactattctag |
7020703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 15918948 - 15919070
Alignment:
| Q |
1 |
agaaaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttg-aatattaactttaaacccagaagcatagcaaaaactctc |
99 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||||||| ||||| || |||||| |||||||||||| ||||||||||||| ||||||||||| |
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| T |
15918948 |
agaaaatttattcactttttttctagagatattagcagaagacatgaatttagatttttttaatattaactttcaacccagaagcatgacaaaaactctc |
15919047 |
T |
|
| Q |
100 |
taacacctctttcactattctag |
122 |
Q |
| |
|
|||||||| |||||||||||||| |
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|
| T |
15919048 |
taacacctgtttcactattctag |
15919070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 37785282 - 37785400
Alignment:
| Q |
4 |
aaatttattcactttgcctcttgcgatattagcagaagacctgaatctaaatttttgaatattaactttaaacccagaagcatagcaaaaactctctaac |
103 |
Q |
| |
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|||||| ||||||||| ||| | |||||||| | || || |||||||| ||||||||||||||||||| || |||||||||| |||| |||| |||| |
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| T |
37785282 |
aaattttttcactttgtttctagagatattagtataaaacatgaatctagatttttgaatattaactttcaatccagaagcatgaaaaaatctctttaac |
37785381 |
T |
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| Q |
104 |
acctctttcactattctag |
122 |
Q |
| |
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||||||||||||||||||| |
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| T |
37785382 |
acctctttcactattctag |
37785400 |
T |
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