View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19820_low_1 (Length: 573)

Name: NF19820_low_1
Description: NF19820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19820_low_1
NF19820_low_1
[»] chr1 (9 HSPs)
chr1 (3-553)||(1729628-1730178)
chr1 (443-500)||(15687142-15687199)
chr1 (449-501)||(7218142-7218194)
chr1 (446-497)||(36151577-36151628)
chr1 (446-476)||(7200935-7200965)
chr1 (446-511)||(2773662-2773727)
chr1 (429-501)||(5421988-5422060)
chr1 (457-501)||(30371106-30371150)
chr1 (276-324)||(41640515-41640562)
[»] chr2 (6 HSPs)
chr2 (450-509)||(41674287-41674346)
chr2 (446-511)||(14209224-14209289)
chr2 (445-501)||(26372804-26372860)
chr2 (427-489)||(40758951-40759013)
chr2 (446-499)||(656847-656900)
chr2 (427-472)||(1112019-1112064)
[»] chr8 (2 HSPs)
chr8 (428-501)||(11000629-11000702)
chr8 (427-476)||(10218842-10218891)
[»] chr3 (6 HSPs)
chr3 (446-501)||(32703085-32703140)
chr3 (449-501)||(25447312-25447364)
chr3 (303-345)||(21146781-21146823)
chr3 (446-511)||(2128309-2128374)
chr3 (446-511)||(42808926-42808991)
chr3 (446-507)||(42809248-42809309)
[»] scaffold0024 (2 HSPs)
scaffold0024 (462-511)||(21336-21385)
scaffold0024 (462-511)||(58900-58949)
[»] chr5 (6 HSPs)
chr5 (446-510)||(11054133-11054196)
chr5 (446-510)||(11615455-11615519)
chr5 (446-476)||(3952045-3952075)
chr5 (446-511)||(465901-465966)
chr5 (375-415)||(6593178-6593218)
chr5 (461-501)||(12425533-12425573)
[»] chr7 (2 HSPs)
chr7 (450-501)||(48157188-48157239)
chr7 (446-490)||(28178916-28178960)
[»] chr6 (3 HSPs)
chr6 (446-501)||(9093624-9093679)
chr6 (446-501)||(1810371-1810423)
chr6 (446-502)||(31624205-31624261)
[»] chr4 (4 HSPs)
chr4 (380-475)||(1404304-1404398)
chr4 (374-429)||(39178373-39178428)
chr4 (450-511)||(47800581-47800642)
chr4 (285-345)||(38879186-38879246)


Alignment Details
Target: chr1 (Bit Score: 539; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 3 - 553
Target Start/End: Complemental strand, 1730178 - 1729628
Alignment:
Q  3 tagaggagaagcaaaggtgctacatagtacacaattagttctcaatttagcaaataaatcatgtatatccaagtaaaaatgtctttgaaaaagcacacac 102  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1730178 tagagcagaaacaaaggtgctacatagtacacaattagttctcaatttagcaaataaatcatgtatatccaagtaaaaatgtctttgaaaaagcacacac 1730079  T
Q  103 aaaaagtgttaaaagaagttctcatcattggataaataatcatgaatacaaatatctgaaaacaggagacgaagtgaaaagaaagtgacaaatttgtccc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1730078 aaaaagtgttaaaagaagttctcatcattggataaataatcatgaatacaaatatctgaaaacaggagacgaagtgaaaagaaagtgacaaatttgtccc 1729979  T
Q  203 taaaagtgagtatagtcccatgacagacagtagcttaattagtgaactaagagacacggaaggcgttgtaagaaggaggtccaaggttcaaacctaggac 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1729978 taaaagtgagtatagtcccatgacagacagtagcttaattagtgaactaagagacacagaaggcgttgtaagaaggaggtccaaggttcaaacctaggac 1729879  T
Q  303 actagcataatcactaacttactaatatttgtctatcaaaaaactaaaagcaaatacgattatgctttagatcctgcttggataaacaacttaatttaca 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1729878 actagcataatcactaacttactaatatttgtctatcaaaaaactaaaagcaaatacgattatgctttagatcctgcttggataaacaacttaatttaca 1729779  T
Q  403 gcgtatatcataagttcttatcatatatataagcacttgttacaagctatttccataataaaagataaaataaactgatattgttttcgtataagctatt 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1729778 gcgtatatcataagttcttatcatatatataagcacttgttacaagctatttccataataaaagataaaataaactgatattgttttcgtataagctatt 1729679  T
Q  503 ttcataagcactatgaagcattgacacggacacggcacaaaaatatgaagg 553  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1729678 ttcataagcactatgaagcattgacacggacacggcacaaaaatatgaagg 1729628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 443 - 500
Target Start/End: Complemental strand, 15687199 - 15687142
Alignment:
Q  443 tacaagctatttccataataaaagataaaataaactgatattgttttcgtataagcta 500  Q
    ||||||||||||| |||| |||| |||||||||| | | |||||||||||||||||||    
T  15687199 tacaagctatttctataacaaaatataaaataaagttaaattgttttcgtataagcta 15687142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 501
Target Start/End: Complemental strand, 7218194 - 7218142
Alignment:
Q  449 ctatttccataataaaagataaaataaactgatattgttttcgtataagctat 501  Q
    |||||||||||||||||| ||||||||| | | ||||||||| ||||||||||    
T  7218194 ctatttccataataaaaggtaaaataaagtcaaattgttttcatataagctat 7218142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 36151628 - 36151577
Alignment:
Q  446 aagctatttccataataaaagataaaataaactgatattgttttcgtataag 497  Q
    |||||||||| |||| ||||||||||||||| | | ||||||||||||||||    
T  36151628 aagctatttcaataacaaaagataaaataaagtcaaattgttttcgtataag 36151577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 476
Target Start/End: Complemental strand, 7200965 - 7200935
Alignment:
Q  446 aagctatttccataataaaagataaaataaa 476  Q
    |||||||||||||||||||||||||||||||    
T  7200965 aagctatttccataataaaagataaaataaa 7200935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 511
Target Start/End: Complemental strand, 2773727 - 2773662
Alignment:
Q  446 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataagc 511  Q
    ||||||||||||||| | ||||||||||||  | | ||||||||  |||||||| |||||||||||    
T  2773727 aagctatttccataacagaagataaaataatttcaaattgttttaatataagctgttttcataagc 2773662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 501
Target Start/End: Complemental strand, 5422060 - 5421988
Alignment:
Q  429 atataagcacttgttacaagctatttccataataaaagataaaataaactgatattgttttcgtataagctat 501  Q
    |||||||  ||| ||| ||||||||||||| | ||||||||||||| | | | ||||||||| ||||||||||    
T  5422060 atataagtgcttattataagctatttccatgacaaaagataaaatatagtcaaattgttttcttataagctat 5421988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 501
Target Start/End: Original strand, 30371106 - 30371150
Alignment:
Q  457 ataataaaagataaaataaactgatattgttttcgtataagctat 501  Q
    |||| ||||||||||||||||| | ||||||||| ||||||||||    
T  30371106 ataacaaaagataaaataaactcaaattgttttcatataagctat 30371150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 41640562 - 41640515
Alignment:
Q  276 aggaggtccaaggttcaaacctaggacactagcataatcactaacttac 324  Q
    ||||||||||||||||||||||| || |||| ||||| |||||||||||    
T  41640562 aggaggtccaaggttcaaaccta-gaaactaacataaccactaacttac 41640515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 509
Target Start/End: Complemental strand, 41674346 - 41674287
Alignment:
Q  450 tatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataa 509  Q
    |||||| |||||||||||||||||||| | | |||||||| |||||||||||||||||||    
T  41674346 tatttcaataataaaagataaaataaaatcagattgtttttgtataagctattttcataa 41674287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 446 - 511
Target Start/End: Original strand, 14209224 - 14209289
Alignment:
Q  446 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataagc 511  Q
    |||||||||| |||| ||||||||||||||| | | | ||||||| |||||||||||| |||||||    
T  14209224 aagctatttcaataacaaaagataaaataaattcaaactgttttcatataagctatttccataagc 14209289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 501
Target Start/End: Complemental strand, 26372860 - 26372804
Alignment:
Q  445 caagctatttccataataaaagataaaataaactgatattgttttcgtataagctat 501  Q
    |||||||||||||||| ||||||||||||||| | |||||| | |||||| ||||||    
T  26372860 caagctatttccataacaaaagataaaataaagtcatattgctctcgtatcagctat 26372804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 489
Target Start/End: Original strand, 40758951 - 40759013
Alignment:
Q  427 atatataagcacttgttacaagctatttccataataaaagataaaataaactgatattgtttt 489  Q
    |||||||||  ||| ||| ||||||||||||||| ||||||||||||||| | | ||||||||    
T  40758951 atatataagaccttattataagctatttccataacaaaagataaaataaagtcaaattgtttt 40759013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 499
Target Start/End: Complemental strand, 656900 - 656847
Alignment:
Q  446 aagctatttccataataaaagataaaataaactgatattgttttcgtataagct 499  Q
    |||||||||| |||| ||||||||||||| | | | ||||||||||||||||||    
T  656900 aagctatttctataacaaaagataaaatataatcaaattgttttcgtataagct 656847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Complemental strand, 1112064 - 1112019
Alignment:
Q  427 atatataagcacttgttacaagctatttccataataaaagataaaa 472  Q
    |||||||| ||||| ||| ||||||||||||||| |||||||||||    
T  1112064 atatataaacacttattataagctatttccataagaaaagataaaa 1112019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 428 - 501
Target Start/End: Complemental strand, 11000702 - 11000629
Alignment:
Q  428 tatataagcacttgttacaagctatttccataataaaagataaaataaactgatattgttttcgtataagctat 501  Q
    ||||| ||| ||| ||| ||||||||||||||| ||||||||||||||| | | |||||||||| |||||||||    
T  11000702 tatatcagcgcttattataagctatttccataacaaaagataaaataaagtcaaattgttttcgaataagctat 11000629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 427 - 476
Target Start/End: Original strand, 10218842 - 10218891
Alignment:
Q  427 atatataagcacttgttacaagctatttccataataaaagataaaataaa 476  Q
    |||||||||| ||||||| ||||| ||||||||| |||||||||||||||    
T  10218842 atatataagctcttgttataagctgtttccataacaaaagataaaataaa 10218891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 501
Target Start/End: Original strand, 32703085 - 32703140
Alignment:
Q  446 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctat 501  Q
    |||||||||| || ||||||||||||||||||| | ||||||||| ||||||||||    
T  32703085 aagctatttctattataaaagataaaataaactcaaattgttttcatataagctat 32703140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 501
Target Start/End: Complemental strand, 25447364 - 25447312
Alignment:
Q  449 ctatttccataataaaagataaaataaactgatattgttttcgtataagctat 501  Q
    ||||||| ||| |||||||||||||||||| | |||||||| |||||||||||    
T  25447364 ctatttctatagtaaaagataaaataaacttaaattgtttttgtataagctat 25447312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 21146781 - 21146823
Alignment:
Q  303 actagcataatcactaacttactaatatttgtctatcaaaaaa 345  Q
    |||| |||||||||||| | |||||||||||||||||||||||    
T  21146781 actaacataatcactaattcactaatatttgtctatcaaaaaa 21146823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 511
Target Start/End: Complemental strand, 2128374 - 2128309
Alignment:
Q  446 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataagc 511  Q
    |||||||||| |||| ||||||||||||||| | | ||||||||  | |||||| |||||||||||    
T  2128374 aagctatttctataacaaaagataaaataaagttaaattgttttactgtaagctgttttcataagc 2128309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 511
Target Start/End: Original strand, 42808926 - 42808991
Alignment:
Q  446 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataagc 511  Q
    ||||| |||| |||| ||||||||||||||| | | ||||||||  |||||||| |||||||||||    
T  42808926 aagctgtttctataacaaaagataaaataaagttaaattgtttttatataagctgttttcataagc 42808991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 507
Target Start/End: Original strand, 42809248 - 42809309
Alignment:
Q  446 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcat 507  Q
    |||||||||| |||| ||||||||||||| | | | ||||||||| |||||||| |||||||    
T  42809248 aagctatttctataacaaaagataaaatatagttaaattgttttcatataagctgttttcat 42809309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 462 - 511
Target Start/End: Complemental strand, 21385 - 21336
Alignment:
Q  462 aaaagataaaataaactgatattgttttcgtataagctattttcataagc 511  Q
    ||||||||||||||| | | |||||||||||||||||| |||||||||||    
T  21385 aaaagataaaataaagttaaattgttttcgtataagctgttttcataagc 21336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 511
Target Start/End: Original strand, 58900 - 58949
Alignment:
Q  462 aaaagataaaataaactgatattgttttcgtataagctattttcataagc 511  Q
    ||||| ||||||||| | | |||||||||||||||||| |||||||||||    
T  58900 aaaagttaaaataaagttaaattgttttcgtataagctgttttcataagc 58949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 510
Target Start/End: Original strand, 11054133 - 11054196
Alignment:
Q  446 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataag 510  Q
    |||||||||| |||||||||||||||||||| | || | ||||||||||||| | ||||||||||    
T  11054133 aagctatttctataataaaagataaaataaagtaat-tagttttcgtataagatgttttcataag 11054196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 510
Target Start/End: Original strand, 11615455 - 11615519
Alignment:
Q  446 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataag 510  Q
    |||||||||  |||| ||||||||||||||| | | ||||||| |||||||||| ||||||||||    
T  11615455 aagctatttttataacaaaagataaaataaagtcaaattgtttacgtataagctgttttcataag 11615519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 476
Target Start/End: Original strand, 3952045 - 3952075
Alignment:
Q  446 aagctatttccataataaaagataaaataaa 476  Q
    |||||||||||||||||||||||||||||||    
T  3952045 aagctatttccataataaaagataaaataaa 3952075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 511
Target Start/End: Original strand, 465901 - 465966
Alignment:
Q  446 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataagc 511  Q
    |||||||||| || | ||||||||||||||| | | |||||||| ||||||||| ||| |||||||    
T  465901 aagctatttctatgacaaaagataaaataaagttaaattgtttttgtataagctgtttacataagc 465966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 415
Target Start/End: Original strand, 6593178 - 6593218
Alignment:
Q  375 cctgcttggataaacaacttaatttacagcgtatatcataa 415  Q
    |||| ||||||||||||||||||||||||| |||| |||||    
T  6593178 cctgtttggataaacaacttaatttacagcttatagcataa 6593218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 461 - 501
Target Start/End: Original strand, 12425533 - 12425573
Alignment:
Q  461 taaaagataaaataaactgatattgttttcgtataagctat 501  Q
    |||||||||||||||| | | ||||||||||||||||||||    
T  12425533 taaaagataaaataaagttaaattgttttcgtataagctat 12425573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 501
Target Start/End: Complemental strand, 48157239 - 48157188
Alignment:
Q  450 tatttccataataaaagataaaataaactgatattgttttcgtataagctat 501  Q
    |||||| |||||||||||||||||||| ||| ||||||||  ||||||||||    
T  48157239 tatttctataataaaagataaaataaagtgaaattgttttaatataagctat 48157188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 490
Target Start/End: Original strand, 28178916 - 28178960
Alignment:
Q  446 aagctatttccataataaaagataaaataaactgatattgttttc 490  Q
    |||||||||| |||| ||||||||||||||| | |||||||||||    
T  28178916 aagctatttctataacaaaagataaaataaagtcatattgttttc 28178960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 501
Target Start/End: Complemental strand, 9093679 - 9093624
Alignment:
Q  446 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctat 501  Q
    |||||||||| |||  ||||||||||||||| | | ||||||||||||||||||||    
T  9093679 aagctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctat 9093624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 501
Target Start/End: Complemental strand, 1810423 - 1810371
Alignment:
Q  446 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctat 501  Q
    |||||||||| |||| |||||||||||||||   ||||||||||| ||||||||||    
T  1810423 aagctatttctataacaaaagataaaataaa---atattgttttcatataagctat 1810371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 502
Target Start/End: Original strand, 31624205 - 31624261
Alignment:
Q  446 aagctatttccataataaaagataaaataaactgatattgttttcgtataagctatt 502  Q
    |||||||||| |||| ||||||||||||||  | | ||||||||||||||| |||||    
T  31624205 aagctatttctataacaaaagataaaataagtttaaattgttttcgtataatctatt 31624261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 475
Target Start/End: Original strand, 1404304 - 1404398
Alignment:
Q  380 ttggataaacaacttaatttacagcgtatatcataagttcttatcatatatataagcacttgttacaagctatttccataataaaagataaaataa 475  Q
    ||||||||||| ||||||| |  |||||||  |||||| || |||||||||| | ||  || ||| |||||||||| |||||||||||||||||||    
T  1404304 ttggataaacagcttaattaagtgcgtatactataagtgctaatcatatataaatgctttt-ttataagctatttctataataaaagataaaataa 1404398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 429
Target Start/End: Complemental strand, 39178428 - 39178373
Alignment:
Q  374 tcctgcttggataaacaacttaatttacagcgtatatcataagttcttatcatata 429  Q
    ||||| |||||||||||||||| |||||||| ||||  |||||| |||||||||||    
T  39178428 tcctgtttggataaacaacttattttacagcttatagtataagtgcttatcatata 39178373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 47800581 - 47800642
Alignment:
Q  450 tatttccataataaaagataaaataaactgatattgttttcgtataagctattttcataagc 511  Q
    |||||| |||| ||||||||||||||| | | | |||||| ||||||||| |||||||||||    
T  47800581 tatttctataacaaaagataaaataaagttaaaatgtttttgtataagctgttttcataagc 47800642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 38879246 - 38879186
Alignment:
Q  285 aaggttcaaacctaggacactagcataatcactaacttactaatatttgtctatcaaaaaa 345  Q
    |||||||||||||| || |||| |||||  ||||||||||||  ||||||||||| |||||    
T  38879246 aaggttcaaacctaagaaactaacataacaactaacttactagcatttgtctatccaaaaa 38879186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University