View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19821_high_5 (Length: 249)
Name: NF19821_high_5
Description: NF19821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19821_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 396937 - 397171
Alignment:
| Q |
1 |
actaaagaatgacatgcatcaccaaatgacacctctccctgagttagtcgctgagccaacaagtgcgcggtcaatgtcctttgtaggcacacacgagtac |
100 |
Q |
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| T |
396937 |
actaaagaatgacatgcatcaccaaatgacacctctccctgagttagtcgctgagccaacaagtgcgcggtcaatgtcctttgtaggcacacacgagtac |
397036 |
T |
|
| Q |
101 |
ttggcgcctgaaattattaaaggagaaggacatggaagtgctgtggattggtggacgttcgggatattcttatacgaactcttgtttggccgaacaccgt |
200 |
Q |
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| T |
397037 |
ttggcgcctgaaattattaaaggagaaggacatggaagtgctgtggattggtggacgttcgggatattcttatacgaactcttgtttggccgaacaccgt |
397136 |
T |
|
| Q |
201 |
tcaaaggttctgggaatcgaaccacaatgtttaat |
235 |
Q |
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| T |
397137 |
tcaaaggttctgggaatcgaaccacaatgtttaat |
397171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 12233923 - 12233731
Alignment:
| Q |
27 |
tgacacctctccctgagttagtcgctgagccaacaagtgcgcggtcaatgtcctttgtaggcacacacgagtacttggcgcctgaaattattaaaggaga |
126 |
Q |
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| T |
12233923 |
tgacaccactccctgagcttatggcggagcccacaaatgcccgatcaatgtcctttgttggcacgcacgagtacttggcgcctgaaatcatcaaaggcga |
12233824 |
T |
|
| Q |
127 |
aggacatggaagtgctgtggattggtggacgttcgggatattcttatacgaactcttgtttggccgaacaccgttcaaaggttctgggaatcg |
219 |
Q |
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| T |
12233823 |
aggtcacggcagtgctgtagactggtggacatttggtatattcttatacgagcttttgtttggtagaactccattcaaaggttcggcgaatcg |
12233731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 171
Target Start/End: Complemental strand, 31314311 - 31314190
Alignment:
| Q |
50 |
gctgagccaacaagtgcgcggtcaatgtcctttgtaggcacacacgagtacttggcgcctgaaattattaaaggagaaggacatggaagtgctgtggatt |
149 |
Q |
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|||||||| |||| || |||||||||||||| || || || || ||||| | || ||||||||||| ||||||||||| ||||||||||| || |||| |
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| T |
31314311 |
gctgagcctacaacagctcggtcaatgtccttcgttggtactcatgagtatctcgcccctgaaattatcaaaggagaaggtcatggaagtgcagttgatt |
31314212 |
T |
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| Q |
150 |
ggtggacgttcgggatattctt |
171 |
Q |
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| T |
31314211 |
ggtggacattcggaattttctt |
31314190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 180
Target Start/End: Complemental strand, 26569555 - 26569446
Alignment:
| Q |
71 |
tcaatgtcctttgtaggcacacacgagtacttggcgcctgaaattattaaaggagaaggacatggaagtgctgtggattggtggacgttcgggatattct |
170 |
Q |
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|||||||| |||||||||||||||||||| | || |||||||| || |||||||||||||| || ||||| || ||||||||||| ||||| ||||||| |
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| T |
26569555 |
tcaatgtcatttgtaggcacacacgagtatctcgcacctgaaatcatcaaaggagaaggacacggtagtgcggtagattggtggactttcggaatattct |
26569456 |
T |
|
| Q |
171 |
tatacgaact |
180 |
Q |
| |
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| || ||||| |
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| T |
26569455 |
tgtatgaact |
26569446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 36109808 - 36109848
Alignment:
| Q |
128 |
ggacatggaagtgctgtggattggtggacgttcgggatatt |
168 |
Q |
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| T |
36109808 |
ggacatggtagtgctgtggattggtggaccttagggatatt |
36109848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 1034900 - 1034836
Alignment:
| Q |
107 |
cctgaaattattaaaggagaaggacatggaagtgctgtggattggtggacgttcgggatattctt |
171 |
Q |
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||||||||||| ||||| ||||| ||||||||||| || || |||||||| || || |||||||| |
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| T |
1034900 |
cctgaaattatcaaaggggaaggtcatggaagtgcagttgactggtggacatttggaatattctt |
1034836 |
T |
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