View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19821_low_1 (Length: 477)
Name: NF19821_low_1
Description: NF19821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19821_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 42265352 - 42265020
Alignment:
| Q |
1 |
aaaacaaattgaagaccaatgtgaaccaaagcgaaaccaccaaaaagaacataaccaaactaatccaagtgaaataggagaaacataacaaccagagacg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42265352 |
aaaacaaattgaagaccaatgtgaaccaaagcgaaaccaccaaaaagaacataaccaaactaatccaagtgaaataggagaaacataacaatcagagacg |
42265253 |
T |
|
| Q |
101 |
aacaaaattaacaagaggcacaagacactcaatcaaagcggatcaaaccatgctcttgataccatgttaaccatctacagtttcaatataataataaagg |
200 |
Q |
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| T |
42265252 |
aacaaaattaacaagagacacgagacactgaatcaaagcggatcaaaccatgctc--------atgttaaccatctacggtttcaatataataataaagg |
42265161 |
T |
|
| Q |
201 |
agctggctagggtttcataagaatgacaatggcattgcataatattga----atacaagcgaatatcataaccgcagtaacctattatctcaaacttccc |
296 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
42265160 |
agccggctagggtttcataagaatgacaatggcattgcataatattgaatatatacaagcaaatatcataaccgcagtaacctattatct-aaacttccc |
42265062 |
T |
|
| Q |
297 |
cttaaactcatgatccaataacactaggcatcaagagtttgt |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
42265061 |
cttaaactcatgatccaataacactaggcatcaagagtttgt |
42265020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 42264950 - 42264898
Alignment:
| Q |
408 |
caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgt |
460 |
Q |
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| T |
42264950 |
caacttactgtgatgcaaaagacttgacctcgtcattattcagaatctgatgt |
42264898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 12861010 - 12861062
Alignment:
| Q |
408 |
caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgt |
460 |
Q |
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| T |
12861010 |
caacttactgtcatgcaacaaactcgacctcgtcattattctgaatctgatgt |
12861062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 20361813 - 20361732
Alignment:
| Q |
53 |
aaccaaactaatccaagtgaaataggagaaacataacaaccagagacgaacaaaattaacaagaggcacaagacactcaatc |
134 |
Q |
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| T |
20361813 |
aaccaaactaatccaacacaaatatgagaaacataacaactagagacaaacaaaattgacaagaggcacaagacactcaatc |
20361732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 171
Target Start/End: Complemental strand, 10740779 - 10740748
Alignment:
| Q |
140 |
ggatcaaaccatgctcttgataccatgttaac |
171 |
Q |
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|
| T |
10740779 |
ggatcaaaccatgctcttgataccatgttaac |
10740748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 13166635 - 13166603
Alignment:
| Q |
138 |
gcggatcaaaccatgctcttgataccatgttaa |
170 |
Q |
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|
||||||||||| ||||||||||||||||||||| |
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|
| T |
13166635 |
gcggatcaaacgatgctcttgataccatgttaa |
13166603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 16653697 - 16653749
Alignment:
| Q |
408 |
caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgt |
460 |
Q |
| |
|
||||||||||| |||||| | |||||||||||||||||||| ||||||||||| |
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|
| T |
16653697 |
caacttactgtcatgcaacaaactcgacctcgtcattattctgaatctgatgt |
16653749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 17628057 - 17628109
Alignment:
| Q |
408 |
caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgt |
460 |
Q |
| |
|
||||||||||| |||||| | |||||||||||||||||||| ||||||||||| |
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|
| T |
17628057 |
caacttactgtcatgcaacaaactcgacctcgtcattattctgaatctgatgt |
17628109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 10414257 - 10414219
Alignment:
| Q |
133 |
tcaaagcggatcaaaccatgctcttgataccatgttaac |
171 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
10414257 |
tcaaaacggatcaaaccatgctcttgataccatgttaac |
10414219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 2483701 - 2483666
Alignment:
| Q |
136 |
aagcggatcaaaccatgctcttgataccatgttaac |
171 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
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|
| T |
2483701 |
aagcggatcgaaccatgctcttgataccatgttaac |
2483666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 24135130 - 24135092
Alignment:
| Q |
133 |
tcaaagcggatcaaaccatgctcttgataccatgttaac |
171 |
Q |
| |
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|||||||||||||||||| |||||||||||||| ||||| |
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| T |
24135130 |
tcaaagcggatcaaaccacgctcttgataccatcttaac |
24135092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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