View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19821_low_2 (Length: 430)

Name: NF19821_low_2
Description: NF19821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19821_low_2
NF19821_low_2
[»] chr3 (32 HSPs)
chr3 (1-210)||(54270938-54271148)
chr3 (1-192)||(30338363-30338554)
chr3 (1-210)||(34128762-34128971)
chr3 (1-210)||(17358131-17358339)
chr3 (1-210)||(30341564-30341768)
chr3 (9-210)||(3476537-3476739)
chr3 (1-210)||(3482001-3482214)
chr3 (1-84)||(4117310-4117393)
chr3 (1-80)||(10321736-10321815)
chr3 (241-348)||(30341423-30341534)
chr3 (369-430)||(3476292-3476353)
chr3 (369-430)||(3481749-3481810)
chr3 (369-430)||(4117050-4117111)
chr3 (369-430)||(17358552-17358613)
chr3 (369-430)||(30338200-30338261)
chr3 (369-430)||(34128511-34128572)
chr3 (370-430)||(54271299-54271359)
chr3 (384-430)||(15762659-15762705)
chr3 (384-430)||(15767820-15767866)
chr3 (384-430)||(17369086-17369132)
chr3 (384-430)||(20090291-20090337)
chr3 (384-430)||(20095416-20095462)
chr3 (384-430)||(55129157-55129203)
chr3 (369-430)||(30341304-30341365)
chr3 (1-49)||(15762717-15762765)
chr3 (1-49)||(15767878-15767926)
chr3 (1-49)||(17369026-17369074)
chr3 (1-49)||(20090349-20090397)
chr3 (1-49)||(20095474-20095522)
chr3 (1-49)||(55129097-55129145)
chr3 (313-348)||(17358459-17358494)
chr3 (314-348)||(54271213-54271247)
[»] chr4 (42 HSPs)
chr4 (1-210)||(41393536-41393747)
chr4 (1-210)||(53797922-53798131)
chr4 (1-210)||(9763609-9763819)
chr4 (8-210)||(13710969-13711172)
chr4 (1-209)||(13695455-13695664)
chr4 (1-188)||(51019002-51019175)
chr4 (1-210)||(47045910-47046108)
chr4 (366-430)||(41393841-41393905)
chr4 (369-430)||(4207028-4207089)
chr4 (369-430)||(13695743-13695804)
chr4 (369-430)||(13711356-13711417)
chr4 (369-430)||(51018806-51018867)
chr4 (369-430)||(47045720-47045781)
chr4 (369-430)||(53798315-53798376)
chr4 (371-430)||(9763373-9763432)
chr4 (241-348)||(53798161-53798257)
chr4 (384-430)||(8985087-8985133)
chr4 (384-430)||(13700877-13700923)
chr4 (384-430)||(21299515-21299561)
chr4 (384-430)||(21304635-21304681)
chr4 (384-430)||(36354562-36354608)
chr4 (384-430)||(36359748-36359794)
chr4 (384-430)||(39999489-39999535)
chr4 (384-430)||(40004447-40004493)
chr4 (384-430)||(54343623-54343669)
chr4 (384-430)||(54348777-54348823)
chr4 (384-430)||(8979967-8980013)
chr4 (384-430)||(54990492-54990538)
chr4 (384-430)||(54991843-54991889)
chr4 (1-49)||(8985145-8985193)
chr4 (1-49)||(13700817-13700865)
chr4 (1-49)||(21304693-21304741)
chr4 (1-49)||(39999429-39999477)
chr4 (1-49)||(40004387-40004435)
chr4 (1-49)||(54343563-54343611)
chr4 (1-49)||(54348717-54348765)
chr4 (62-116)||(4205920-4205974)
chr4 (1-49)||(8980025-8980073)
chr4 (1-49)||(21299573-21299621)
chr4 (1-49)||(54990550-54990598)
chr4 (1-49)||(36359688-36359736)
chr4 (1-49)||(54991783-54991831)
[»] scaffold0594 (2 HSPs)
scaffold0594 (9-193)||(8818-9002)
scaffold0594 (369-430)||(8634-8695)
[»] chr6 (24 HSPs)
chr6 (8-210)||(2817739-2817942)
chr6 (1-207)||(31981856-31982063)
chr6 (1-209)||(34142382-34142591)
chr6 (1-209)||(34154998-34155207)
chr6 (1-101)||(34376222-34376322)
chr6 (8-95)||(24191080-24191167)
chr6 (1-83)||(6728159-6728241)
chr6 (8-84)||(24192188-24192264)
chr6 (152-209)||(24191008-24191066)
chr6 (152-209)||(24192117-24192175)
chr6 (369-430)||(34142767-34142828)
chr6 (369-430)||(34155383-34155444)
chr6 (369-430)||(2817501-2817562)
chr6 (369-430)||(6727877-6727938)
chr6 (369-430)||(34376450-34376511)
chr6 (384-430)||(21402108-21402154)
chr6 (384-430)||(22697872-22697918)
chr6 (384-430)||(22703048-22703094)
chr6 (369-430)||(24190754-24190816)
chr6 (384-430)||(29490912-29490958)
chr6 (384-430)||(31983476-31983522)
chr6 (1-49)||(22697930-22697978)
chr6 (1-49)||(22703106-22703154)
chr6 (313-348)||(2817620-2817655)
[»] chr7 (39 HSPs)
chr7 (1-210)||(16539005-16539214)
chr7 (1-210)||(16626448-16626657)
chr7 (1-209)||(42572238-42572447)
chr7 (1-209)||(12934690-12934899)
chr7 (1-210)||(19309203-19309413)
chr7 (1-210)||(21080643-21080841)
chr7 (1-210)||(17495696-17495893)
chr7 (1-210)||(17557321-17557518)
chr7 (9-137)||(43893170-43893298)
chr7 (104-206)||(32212318-32212421)
chr7 (8-101)||(47176852-47176945)
chr7 (1-94)||(2234332-2234432)
chr7 (369-430)||(17496086-17496147)
chr7 (369-430)||(17557067-17557128)
chr7 (369-430)||(42572586-42572647)
chr7 (369-430)||(47176596-47176657)
chr7 (384-430)||(2234052-2234098)
chr7 (369-430)||(12935070-12935131)
chr7 (369-430)||(19308976-19309037)
chr7 (369-430)||(21080421-21080482)
chr7 (369-430)||(32212065-32212126)
chr7 (369-430)||(43893528-43893589)
chr7 (384-430)||(33238422-33238468)
chr7 (384-430)||(33243599-33243645)
chr7 (384-430)||(47994220-47994266)
chr7 (384-430)||(47999395-47999441)
chr7 (308-348)||(21080540-21080580)
chr7 (1-49)||(33238362-33238410)
chr7 (1-49)||(33243539-33243587)
chr7 (1-49)||(47994160-47994208)
chr7 (1-49)||(47999335-47999383)
chr7 (369-430)||(16538773-16538834)
chr7 (369-430)||(16626828-16626889)
chr7 (1-37)||(32212419-32212455)
chr7 (159-209)||(43893295-43893346)
chr7 (315-348)||(2234171-2234204)
chr7 (241-340)||(32212191-32212283)
chr7 (308-344)||(16538896-16538932)
chr7 (308-344)||(16626730-16626766)
[»] scaffold0060 (2 HSPs)
scaffold0060 (1-210)||(37303-37513)
scaffold0060 (369-430)||(37640-37701)
[»] chr1 (21 HSPs)
chr1 (1-210)||(3584894-3585104)
chr1 (1-210)||(5730398-5730608)
chr1 (1-210)||(48246300-48246485)
chr1 (369-430)||(3585287-3585348)
chr1 (369-430)||(5730757-5730818)
chr1 (384-430)||(5725366-5725412)
chr1 (384-430)||(27711690-27711736)
chr1 (384-430)||(34317914-34317960)
chr1 (384-430)||(36684344-36684390)
chr1 (384-430)||(37404100-37404146)
chr1 (384-430)||(37409219-37409265)
chr1 (369-430)||(48246072-48246133)
chr1 (384-430)||(11250805-11250851)
chr1 (384-430)||(27716810-27716856)
chr1 (1-49)||(27711630-27711678)
chr1 (1-49)||(34317972-34318020)
chr1 (1-49)||(37409277-37409325)
chr1 (300-346)||(5725314-5725361)
chr1 (5-49)||(27716754-27716798)
chr1 (1-49)||(36684402-36684450)
chr1 (1-49)||(37404158-37404206)
[»] scaffold0166 (4 HSPs)
scaffold0166 (8-210)||(13331-13534)
scaffold0166 (1-160)||(18835-18994)
scaffold0166 (369-430)||(13086-13147)
scaffold0166 (369-430)||(18543-18604)
[»] chr8 (25 HSPs)
chr8 (34-194)||(17955442-17955602)
chr8 (1-128)||(21642941-21643068)
chr8 (1-128)||(21643316-21643443)
chr8 (9-128)||(21641441-21641560)
chr8 (9-128)||(21641816-21641935)
chr8 (9-128)||(21642191-21642310)
chr8 (9-128)||(21642566-21642685)
chr8 (1-113)||(24885006-24885118)
chr8 (1-128)||(21643756-21643883)
chr8 (369-430)||(17955234-17955295)
chr8 (369-430)||(21641226-21641287)
chr8 (369-430)||(24885310-24885371)
chr8 (369-430)||(43998646-43998707)
chr8 (1-78)||(43998955-43999032)
chr8 (384-430)||(32016120-32016166)
chr8 (369-430)||(42513948-42514009)
chr8 (161-210)||(43998883-43998932)
chr8 (384-430)||(2165495-2165541)
chr8 (384-430)||(32010946-32010992)
chr8 (1-49)||(32010886-32010934)
chr8 (1-49)||(32016060-32016108)
chr8 (159-210)||(42514127-42514179)
chr8 (241-288)||(43998803-43998849)
chr8 (1-43)||(42514180-42514222)
chr8 (1-49)||(2165553-2165601)
[»] chr2 (21 HSPs)
chr2 (1-210)||(4163182-4163379)
chr2 (1-210)||(28751343-28751531)
chr2 (369-430)||(4162995-4163056)
chr2 (369-430)||(28751121-28751182)
chr2 (384-430)||(40392686-40392732)
chr2 (384-430)||(42723080-42723126)
chr2 (384-430)||(42728249-42728295)
chr2 (384-430)||(44096722-44096768)
chr2 (384-430)||(44754235-44754281)
chr2 (384-430)||(44759401-44759447)
chr2 (241-290)||(4163106-4163153)
chr2 (1-49)||(40392626-40392674)
chr2 (1-49)||(42723138-42723186)
chr2 (1-49)||(42728307-42728355)
chr2 (1-49)||(44754293-44754341)
chr2 (1-49)||(44759459-44759507)
chr2 (384-430)||(40518149-40518196)
chr2 (1-48)||(40519940-40519987)
chr2 (384-430)||(40520004-40520051)
chr2 (1-49)||(44096662-44096710)
chr2 (1-48)||(40518213-40518260)
[»] chr5 (27 HSPs)
chr5 (1-145)||(1413710-1413854)
chr5 (1-210)||(36254129-36254332)
chr5 (1-210)||(26709396-26709584)
chr5 (1-210)||(26979130-26979318)
chr5 (1-160)||(24776452-24776611)
chr5 (8-160)||(24770997-24771149)
chr5 (77-145)||(1413444-1413512)
chr5 (369-430)||(24770705-24770766)
chr5 (369-430)||(24776159-24776220)
chr5 (65-115)||(1413507-1413557)
chr5 (369-430)||(1413173-1413234)
chr5 (369-430)||(36254503-36254564)
chr5 (384-430)||(17505320-17505366)
chr5 (384-430)||(17510425-17510471)
chr5 (384-430)||(42019940-42019986)
chr5 (384-430)||(42024720-42024766)
chr5 (384-430)||(43580027-43580073)
chr5 (1-49)||(17505260-17505308)
chr5 (1-49)||(17510365-17510413)
chr5 (1-49)||(41858893-41858941)
chr5 (1-49)||(42019880-42019928)
chr5 (369-430)||(26709674-26709735)
chr5 (369-430)||(26979408-26979469)
chr5 (1-49)||(42024660-42024708)
chr5 (393-430)||(41858960-41858997)
chr5 (394-430)||(41853846-41853882)
chr5 (1-49)||(43579967-43580015)
[»] scaffold0517 (2 HSPs)
scaffold0517 (384-430)||(3930-3976)
scaffold0517 (1-49)||(3870-3918)
[»] scaffold0014 (4 HSPs)
scaffold0014 (384-430)||(26793-26839)
scaffold0014 (384-430)||(31965-32011)
scaffold0014 (1-49)||(26733-26781)
scaffold0014 (1-49)||(31905-31953)
[»] scaffold0055 (2 HSPs)
scaffold0055 (384-430)||(3444-3490)
scaffold0055 (1-49)||(3384-3432)
[»] scaffold0052 (2 HSPs)
scaffold0052 (384-430)||(81045-81091)
scaffold0052 (1-49)||(81103-81151)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 54270938 - 54271148
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  54270938 attctcggttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacgcgccaaa 54271037  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcggg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  54271038 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtcctccgcgtgcggg 54271137  T
Q  200 aatctcggagc 210  Q
    |||||||||||    
T  54271138 aatctcggagc 54271148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 30338554 - 30338363
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30338554 attctcggttttggagtgaagaatccaaatcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggtttgcgacccgccaaa 30338455  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgc 192  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30338454 catagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgc 30338363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 34128971 - 34128762
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||||||||||||||||||||| | | |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  34128971 attctcagttttggagtgaagaatgcaaatcccgacctctctatttatagaggggatttcacctcgttttctccgccgacccggttcgcgacccgccaac 34128872  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgcgtgcggga 200  Q
     |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  34128871 gttagcccacgacccagcaacggtaacccacgacgtggaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgtgtgcggga 34128772  T
Q  201 atctcggagc 210  Q
    ||||||||||    
T  34128771 atctcggagc 34128762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 17358131 - 17358339
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||     
T  17358131 attctcagttttggagtgaagaatgcaaatcccgagctctctatttatagaggggatttcacctcgttttctctgccgacc-ggttcgcgacccgccaac 17358229  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgcgtgcggga 200  Q
     |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  17358230 gttagcccacgacccagcaacggtaacccacgactcggaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgtgtgcggga 17358329  T
Q  201 atctcggagc 210  Q
    ||||||||||    
T  17358330 atctcggagc 17358339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 30341768 - 30341564
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30341768 attctcggttttggagtgaagaatcccaatcccgagctctctatttatagaggggatttgacctcgttttctccgccgaccctgttcgcgacccgccaaa 30341669  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgcgtgcggga 200  Q
    |||||||||||||||| ||| |||||||||| |||     ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30341668 cttagcccacgacccattaagggtaacccaccacg-----acgcggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgcgtgcggga 30341574  T
Q  201 atctcggagc 210  Q
    ||||||||||    
T  30341573 atctcggagc 30341564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 3476739 - 3476537
Alignment:
Q  9 ttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagccc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||||||||||||||  |||||    
T  3476739 ttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgaccttgttttctccgctgacccggttcgcgacccgccaaacccagccc 3476640  T
Q  109 acgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcg 206  Q
    |||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  3476639 acgacccacgtaacggtaa-ccacgacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgtgggacttggtcctccgcgtgcgggaaactcg 3476541  T
Q  207 gagc 210  Q
    ||||    
T  3476540 gagc 3476537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 3482214 - 3482001
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||| |||    
T  3482214 attctcggttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgacctcgttttctccgccgacccggttcgtgacccgctaaa 3482115  T
Q  101 cttagc---ccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtg 195  Q
    |  |||   |||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||| |||||||||    
T  3482114 cccagcccaccacgacccacgtaacggtaa-ccacgacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgcgggacttggtcctccgcgtg 3482016  T
Q  196 cgggaatctcggagc 210  Q
    |||||| ||||||||    
T  3482015 cgggaaactcggagc 3482001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4117393 - 4117310
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccgg 84  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||    
T  4117393 attctcggttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgacctcgttttctccgccgacccgg 4117310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 10321736 - 10321815
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgac 80  Q
    |||||| ||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10321736 attctcggttttggagtgaagaatgcaaatcccgagctctctatttatagaggggatttgacctcgttttctccgccgac 10321815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 30341534 - 30341423
Alignment:
Q  241 ctgagcaccaaaaaatttatatttctttatagacaagcccaagccc------ggtccggtcggtcgacggctgcgtcgcgcgcgcgtgtgtcttatatat 334  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||      || |||||||| || ||||  || ||||||||||||||||||||||||    
T  30341534 ctgagcaccaaaaaat--atatttctttatagacaagcccaagcccaagctcggcccggtcggacggcggcgtcgccgcgcgcgcgtgtgtcttatatat 30341437  T
Q  335 aatttttggcaagc 348  Q
    ||||||||||||||    
T  30341436 aatttttggcaagc 30341423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 3476353 - 3476292
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  3476353 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 3476292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 3481810 - 3481749
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  3481810 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 3481749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 4117111 - 4117050
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  4117111 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 4117050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 17358552 - 17358613
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  17358552 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 17358613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 30338261 - 30338200
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  30338261 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 30338200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 34128572 - 34128511
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  34128572 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 34128511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 370 - 430
Target Start/End: Original strand, 54271299 - 54271359
Alignment:
Q  370 acatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  54271299 acatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 54271359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 15762705 - 15762659
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  15762705 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 15762659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 15767866 - 15767820
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  15767866 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 15767820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 17369086 - 17369132
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  17369086 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 17369132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 20090337 - 20090291
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  20090337 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 20090291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 20095462 - 20095416
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  20095462 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 20095416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 55129157 - 55129203
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  55129157 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 55129203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 30341365 - 30341304
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  30341365 cacatatataaacactactagagtgtgtgatctacctaatgtgggccataaaattttcaatt 30341304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15762765 - 15762717
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  15762765 attctcagttttggagtgaagaatactattcccgagctctcaatttata 15762717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15767926 - 15767878
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  15767926 attctcagttttggagtgaagaatactattcccgagctctcaatttata 15767878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17369026 - 17369074
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  17369026 attctcagttttggagtgaagaatactattcccgagctctcaatttata 17369074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20090397 - 20090349
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  20090397 attctcagttttggagtgaagaatactattcccgagctctcaatttata 20090349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 20095522 - 20095474
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  20095522 attctcagttttggagtgaagaatactattcccgagctctcaatttata 20095474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 55129097 - 55129145
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  55129097 attctcagttttggagtgaagaatactattcccgagctctcaatttata 55129145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 348
Target Start/End: Original strand, 17358459 - 17358494
Alignment:
Q  313 cgcgcgcgtgtgtcttatatataatttttggcaagc 348  Q
    ||||||||||||||||||||||||||||||||||||    
T  17358459 cgcgcgcgtgtgtcttatatataatttttggcaagc 17358494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 348
Target Start/End: Original strand, 54271213 - 54271247
Alignment:
Q  314 gcgcgcgtgtgtcttatatataatttttggcaagc 348  Q
    ||||||||||||||| |||||||||||||||||||    
T  54271213 gcgcgcgtgtgtcttttatataatttttggcaagc 54271247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 41393536 - 41393747
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41393536 attctcggttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 41393635  T
Q  101 cttagcccacgacccagt-aacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgg 198  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||| |    
T  41393636 cttagcccacgacccagtaaacggtaacccacgacgcggaaacgtggagctgaagcttacgcatgtggaaaacgtgtgagacttggtcctccgcgtgcag 41393735  T
Q  199 gaatctcggagc 210  Q
    ||||||||||||    
T  41393736 gaatctcggagc 41393747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 53797922 - 53798131
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  53797922 attctcggttttggagtgaagaatgctaatcccgagctctctatttatagaggggatttgacctcgttttatccgccgacccggttcgcgacccgccaac 53798021  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgcgt-gcggg 199  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |||||    
T  53798022 gttagcccacgaccc-gtaacggtaacccacgacgcggaaacgtggagctgaagcatgcgcgtgtggaaaacgtgtgagacttggtctctgcgtggcggg 53798120  T
Q  200 aatctcggagc 210  Q
    |||||||||||    
T  53798121 aatctcggagc 53798131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 9763819 - 9763609
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||    
T  9763819 attctcggttttggagtgaagaataccaatcccgagctctctatttatagaggggattcgacttcgttttctcctccgacccggttcgcgacccgccaaa 9763720  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgg 198  Q
    |  ||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9763719 cccagcccacgacccacgtaacggtaa-ccatgacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgg 9763621  T
Q  199 gaatctcggagc 210  Q
    ||||||||||||    
T  9763620 gaatctcggagc 9763609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 13710969 - 13711172
Alignment:
Q  8 gttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||||||||||||||  ||||    
T  13710969 gttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgaccttgttttctccgctgacccggttcgcgacccgccaaacccagcc 13711068  T
Q  108 cacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgggaatctc 205  Q
    ||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||    
T  13711069 cacgacccacgtaacggtaa-ccacgacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgtgggacttggtcctccgcgtgcgggaaactc 13711167  T
Q  206 ggagc 210  Q
    |||||    
T  13711168 ggagc 13711172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 13695455 - 13695664
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| || || |||||| ||||||||| ||| ||||||||||||||| ||||    
T  13695455 attctcggttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgacctcattttctccgtcgaaccggttcgcgacccggcaaa 13695554  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgg 198  Q
    || ||||||||||||| |||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||||    
T  13695555 ctcagcccacgacccacgtaacggtaa-ccacgacgcggaaacgtggagcggaaacttgcgcgtgtgaaaaacgtgtgggacttggtcctccgcgtgcgg 13695653  T
Q  199 gaatctcggag 209  Q
    |||||||||||    
T  13695654 gaatctcggag 13695664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 51019175 - 51019002
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||||            | |||    
T  51019175 attctcggttttggagtgaagaatcccattcccgaggtctctatttatagagaggattttaccttgttttctccgccgacccg------------cgaaa 51019088  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtct 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  51019087 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtg--aaacgtgtgagacttggtct 51019002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 47046108 - 47045910
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||            |||||    
T  47046108 attctcggttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgacctcgttttctccgccgacccg------------ccaaa 47046021  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgg 198  Q
    |  ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| | |||||||| ||||||||||||    
T  47046020 cccagcccacgacccacgtaacggtaacc-acgacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgcgggacttggtcctccgcgtgcgg 47045922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 41393841 - 41393905
Alignment:
Q  366 tcacacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  41393841 tcacacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 41393905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 4207028 - 4207089
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  4207028 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 4207089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 13695743 - 13695804
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  13695743 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 13695804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 13711356 - 13711417
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  13711356 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 13711417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 51018867 - 51018806
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  51018867 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 51018806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 47045781 - 47045720
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||||    
T  47045781 cacatatataaacactactagagtgtgtgatctatccaatgtgggacataaaattttcaatt 47045720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 53798315 - 53798376
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   ||||||||||||||||||||||||||| |||||||||||||||||||    
T  53798315 cacatatataaacactactagagtgtgtgatctacccaatgtaggacataaaattttcaatt 53798376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 430
Target Start/End: Complemental strand, 9763432 - 9763373
Alignment:
Q  371 catatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||   |||||||||||||||||||| ||||||||||||||||||||||||||    
T  9763432 catatataaacactactagagtgtgtgatctactcaatgtgggacataaaattttcaatt 9763373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 53798161 - 53798257
Alignment:
Q  241 ctgagcaccaaaaaatttatatttctttatagacaagcccaagcccggtccggtcggtcgacggctgcgtcgcgcgcgcgtgtgtcttatatataatttt 340  Q
    ||||||||||||||||  |||||||||||||||||||||||||      |||||||   |||||  |||| |||||||||||||||||||||||||||||    
T  53798161 ctgagcaccaaaaaat--atatttctttatagacaagcccaag------ccggtcg---gacggtggcgttgcgcgcgcgtgtgtcttatatataatttt 53798249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 8985133 - 8985087
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  8985133 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 8985087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 13700877 - 13700923
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  13700877 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 13700923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 21299561 - 21299515
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  21299561 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 21299515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 21304681 - 21304635
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  21304681 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 21304635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 36354562 - 36354608
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  36354562 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 36354608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 36359748 - 36359794
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  36359748 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 36359794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 39999489 - 39999535
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  39999489 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 39999535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 40004447 - 40004493
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  40004447 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 40004493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 54343623 - 54343669
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  54343623 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 54343669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 54348777 - 54348823
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  54348777 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 54348823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 8980013 - 8979967
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| || |||||||||||||||||||||    
T  8980013 tactagagtgtgtgatctacccgatatgggacataaaattttcaatt 8979967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 54990538 - 54990492
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||    
T  54990538 tactagagtgtgtgatctatccgatgtgggacataaaattttcaatt 54990492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 54991843 - 54991889
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||    
T  54991843 tactagagtgtgtgatctatccgatgtgggacataaaattttcaatt 54991889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8985193 - 8985145
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  8985193 attctcagttttggagtgaagaatactattcccgagctctcaatttata 8985145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13700817 - 13700865
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  13700817 attctcagttttggagtgaagaatactattcccgagctctcaatttata 13700865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21304741 - 21304693
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  21304741 attctcagttttggagtgaagaatactattcccgagctctcaatttata 21304693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 39999429 - 39999477
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  39999429 attctcagttttggagtgaagaatactattcccgagctctcaatttata 39999477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40004387 - 40004435
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  40004387 attctcagttttggagtgaagaatactattcccgagctctcaatttata 40004435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 54343563 - 54343611
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  54343563 attctcagttttggagtgaagaatactattcccgagctctcaatttata 54343611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 54348717 - 54348765
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  54348717 attctcagttttggagtgaagaatactattcccgagctctcaatttata 54348765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 4205920 - 4205974
Alignment:
Q  62 cctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccca 116  Q
    |||| ||||||||||||||||||||| |||||||| ||||  |||||||||||||    
T  4205920 cctcattttctccgccgacccggttcacgacccgctaaacccagcccacgaccca 4205974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8980073 - 8980025
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||| ||||||||| |||||||    
T  8980073 attctcagttttggagtgaagaatactattctcgagctctcaatttata 8980025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21299621 - 21299573
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    ||||||||||||||||| |||||| | |||||||||||||| |||||||    
T  21299621 attctcagttttggagtaaagaatactattcccgagctctcaatttata 21299573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 54990598 - 54990550
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | || ||||||||||| |||||||    
T  54990598 attctcagttttggagtgaagaatactatacccgagctctcaatttata 54990550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36359688 - 36359736
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    ||||||||||||||||| |||||| | ||||| |||||||| |||||||    
T  36359688 attctcagttttggagtaaagaatactattcctgagctctcaatttata 36359736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 54991783 - 54991831
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    ||||||||||||| |||||||||| | ||||||||||| || |||||||    
T  54991783 attctcagttttgaagtgaagaatactattcccgagctttcaatttata 54991831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 9002 - 8818
Alignment:
Q  9 ttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagccc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9002 ttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagccc 8903  T
Q  109 acgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgcg 193  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  8902 acgactcagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtggaaaatgtgtgagacttggtctccgcg 8818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 8695 - 8634
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||| ||||    
T  8695 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttaaatt 8634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 7e-90; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 2817942 - 2817739
Alignment:
Q  8 gttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcc 107  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  2817942 gttttggagtaaagaatctcattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaacgttagcc 2817843  T
Q  108 cacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgcgtgcgggaatctcg 206  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||    
T  2817842 cacgacccacgtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtggaaaacgggtgagacttggtctccgcgtgtgggaatctcg 2817743  T
Q  207 gagc 210  Q
    ||||    
T  2817742 gagc 2817739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 31981856 - 31982063
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  31981856 attctcggttttggagtgaagaataccaatcccgagctctctatttatagaggggattcgacttcgttttctccgccgacccggttcgcgacccgccaaa 31981955  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgg 198  Q
    |  | ||||||||||| |||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||||    
T  31981956 cccatcccacgacccacgtaacggtaa-ccacgacgcgaaaacgtggagcggaagcttgcacgtgtgaaaaatgtgtgagacttggtcctccgcgtgcgg 31982054  T
Q  199 gaatctcgg 207  Q
    |||||||||    
T  31982055 gaatctcgg 31982063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 34142382 - 34142591
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||| |||||||||| || ||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  34142382 attctcggttttggagtgaagaatccaattcccgagcactttatttatagaggggaattttcctcgttttctccgccgacccggttcgcgacccgccaaa 34142481  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgg 198  Q
    || ||||||||||||| |||| ||||| |||||||||||||||||||||  ||||||||| ||||||||||||||||| || ||||| ||||| ||||||    
T  34142482 ctcagcccacgacccacgtaatggtaa-ccacgacgcggaaacgtggagaggaagcttgcacgtgtgaaaaacgtgtgggatttggtcctccgtgtgcgg 34142580  T
Q  199 gaatctcggag 209  Q
    ||| |||||||    
T  34142581 gaaactcggag 34142591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 34154998 - 34155207
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||| |||||||||| || ||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  34154998 attctcggttttggagtgaagaatccaattcccgagcactttatttatagaggggaattttcctcgttttctccgccgacccggttcgcgacccgccaaa 34155097  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgg 198  Q
    || ||||||||||||| |||| ||||| |||||||||||||||||||||  ||||||||| ||||||||||||||||| || ||||| ||||| ||||||    
T  34155098 ctcagcccacgacccacgtaatggtaa-ccacgacgcggaaacgtggagaggaagcttgcacgtgtgaaaaacgtgtgggatttggtcctccgtgtgcgg 34155196  T
Q  199 gaatctcggag 209  Q
    ||| |||||||    
T  34155197 gaaactcggag 34155207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 34376222 - 34376322
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  34376222 attctcggttttggagtgaagaatcccattcccgagctctctatttatagaggggaattttcctcgttttctccgccgacccggttcgcgacccgccaaa 34376321  T
Q  101 c 101  Q
    |    
T  34376322 c 34376322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 24191167 - 24191080
Alignment:
Q  8 gttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| || |||||||||||||||||||    
T  24191167 gttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgacctcgttttcttcgtcgacccggttcgcgacccg 24191080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6728241 - 6728159
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccg 83  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||    
T  6728241 attctcggttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgacctcgttttctccgctgacccg 6728159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 24192264 - 24192188
Alignment:
Q  8 gttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccgg 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| || ||||||||    
T  24192264 gttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgacctcgttttcttcgtcgacccgg 24192188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 24191066 - 24191008
Alignment:
Q  152 aagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggag 209  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24191066 aagcttgcgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgggaatctcggag 24191008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 24192175 - 24192117
Alignment:
Q  152 aagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggag 209  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24192175 aagcttgcgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgggaatctcggag 24192117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 34142767 - 34142828
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  34142767 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 34142828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 34155383 - 34155444
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  34155383 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 34155444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 2817562 - 2817501
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||| ||||||||||||    
T  2817562 cacatatataaacactactagagtgtgtgatctacccaatgtgggacattaaattttcaatt 2817501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 6727938 - 6727877
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||    
T  6727938 cacatatataaacactactagagtgtgtgatctacccaatgtggaacataaaattttcaatt 6727877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 34376450 - 34376511
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||||    
T  34376450 cacatatataaacactactagagtgtgttatctacccaatgtgggacataaaattttcaatt 34376511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 21402108 - 21402154
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  21402108 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 21402154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 22697918 - 22697872
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  22697918 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 22697872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 22703094 - 22703048
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  22703094 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 22703048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 24190816 - 24190754
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacat-aaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||| |||||||||||||    
T  24190816 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaaattttcaatt 24190754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 29490958 - 29490912
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  29490958 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 29490912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 31983476 - 31983522
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  31983476 tactagagtgtgtgatctacccaatgcgggacataaaattttcaatt 31983522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22697978 - 22697930
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  22697978 attctcagttttggagtgaagaatactattcccgagctctcaatttata 22697930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22703154 - 22703106
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  22703154 attctcagttttggagtgaagaatactattcccgagctctcaatttata 22703106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 348
Target Start/End: Complemental strand, 2817655 - 2817620
Alignment:
Q  313 cgcgcgcgtgtgtcttatatataatttttggcaagc 348  Q
    ||||||||||||||||||||||||||||||||||||    
T  2817655 cgcgcgcgtgtgtcttatatataatttttggcaagc 2817620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 16539214 - 16539005
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||| |||||||||||||| |||    
T  16539214 attctcggttttggagtgaagaatcccattcccgagctctctatttatagaggggaattttcctcgttttctccgccgacctggttcgcgacccgcgaaa 16539115  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcggg 199  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16539114 cttagcccacgacccagtaacggtaa-ccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcggg 16539016  T
Q  200 aatctcggagc 210  Q
    |||| ||||||    
T  16539015 aatcgcggagc 16539005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 16626448 - 16626657
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||| |||||||||||||| |||    
T  16626448 attctcggttttggagtgaagaatcccattcccgagctctctatttatagaggggaattttcctcgttttctccgccgacctggttcgcgacccgcgaaa 16626547  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcggg 199  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16626548 cttagcccacgacccagtaacggtaa-ccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcggg 16626646  T
Q  200 aatctcggagc 210  Q
    |||| ||||||    
T  16626647 aatcgcggagc 16626657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 42572238 - 42572447
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||||| ||||    
T  42572238 attctcggttttggagtgaagaatcccattcccgagttctctatttatagagaggtttcgacctcgttttctccgccgacccggttcgcgacccggcaaa 42572337  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgg 198  Q
    || ||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42572338 ctcagcccacgacccacgtaacggtaa-ccacgacgcggaaacgtggagcagaagcttgcgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgg 42572436  T
Q  199 gaatctcggag 209  Q
    |||||||||||    
T  42572437 gaatctcggag 42572447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 12934690 - 12934899
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||  | || |||||||||||||||||||||||||||||||||||| ||||    
T  12934690 attctcggttttggagtgaagaatcccattcccgagctctctatttatagagatgtttcgacctcgttttctccgccgacccggttcgcgacccggcaaa 12934789  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgg 198  Q
    || ||||||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12934790 ctcagcccacgacccacgtaacggtaa-ccacggcgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgg 12934888  T
Q  199 gaatctcggag 209  Q
    |||| ||||||    
T  12934889 gaatatcggag 12934899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 19309413 - 19309203
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||||||    
T  19309413 attctcggttttggagtgaagaatcccattcccgagctctctatttatagaggggaattttcctcgttttctccgccgacccggctcgcgacccgccaaa 19309314  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgg 198  Q
    |  ||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||| | ||||||||||    
T  19309313 cccagcccacgacccacgtaacggtaa-ccacgacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgcgggacttggtccgccgcgtgcgg 19309215  T
Q  199 gaatctcggagc 210  Q
    ||| ||||||||    
T  19309214 gaaactcggagc 19309203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 21080841 - 21080643
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    ||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  21080841 attctcagttttgaagtgaagaatgcaaatcccgagctctctatttatagaggggatttgacctcgttttctccaccgacccggttcgcgacccgccaac 21080742  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgcgtgcggga 200  Q
     |||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||           ||||||||||||||||| ||||||||    
T  21080741 gttagcccacgacccagcaacggtaacccacgacgtggaaacgtggaactgaagcttgcgcgt-----------gtgagacttggtctccgtgtgcggga 21080653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 17495696 - 17495893
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  17495696 attctcggttttggagtaaagaatcccattcccgagctctctatttatagaggggaattttcctcgttttctccgccgacccggttcgcgacccgccaaa 17495795  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgg 198  Q
    || |||||||||||||  ||||||||| |||| |||||||||||             ||| |||||||||||||||||||||||||| |||||||||||     
T  17495796 ctcagcccacgacccacataacggtaa-ccaccacgcggaaacg-------------tgctcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgc 17495881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 17557518 - 17557321
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  17557518 attctcggttttggagtaaagaatcccattcccgagctctctatttatagaggggaattttcctcgttttctccgccgacccggttcgcgacccgccaaa 17557419  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgg 198  Q
    || |||||||||||||  ||||||||| |||| |||||||||||             ||| |||||||||||||||||||||||||| |||||||||||     
T  17557418 ctcagcccacgacccacataacggtaa-ccaccacgcggaaacg-------------tgctcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgc 17557333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 43893170 - 43893298
Alignment:
Q  9 ttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagccc 108  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||||||||||  |||||    
T  43893170 ttttggagtgaagaatcccattcccgagctctctatttatagcggggaattttcctcgttttctccgccgacccggttcgcgacccgccaaacccagccc 43893269  T
Q  109 acgaccca-gtaacggtaacccacgacgcg 137  Q
    |||||||| |||||||||| ||||||||||    
T  43893270 acgacccacgtaacggtaa-ccacgacgcg 43893298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 32212421 - 32212318
Alignment:
Q  104 agcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgggaat 202  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||    
T  32212421 agccctcgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttgatcctccgcgtgcgggaat 32212322  T
Q  203 ctcg 206  Q
    ||||    
T  32212321 ctcg 32212318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 47176945 - 47176852
Alignment:
Q  8 gttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaac 101  Q
    |||||||||||||||||| |||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||    
T  47176945 gttttggagtgaagaatctcattcccgagctctctatttatagagaggtttcgaccttgttttctccgccgacccggttcgcgacccgccaaac 47176852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 2234432 - 2234332
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctc-------gttttctccgccgacccggttcgcgacc 93  Q
    |||||| ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  2234432 attctcggttttggagtgaagaatactaatcccgagctctctatttatagaggggatttgacctcgtttctcgttttctccgccgacccggttcgcgacc 2234333  T
Q  94 c 94  Q
    |    
T  2234332 c 2234332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 17496086 - 17496147
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  17496086 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 17496147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 17557128 - 17557067
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  17557128 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 17557067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 42572586 - 42572647
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  42572586 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 42572647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 47176657 - 47176596
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  47176657 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 47176596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 2234098 - 2234052
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2234098 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 2234052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 12935070 - 12935131
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||    
T  12935070 cacatatataaacactactaaagtgtgtgatctacccaatgtgggacataaaattttcaatt 12935131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 19309037 - 19308976
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||||    
T  19309037 cacatatataaacactactagagtgtgtgatctatccaatgtgggacataaaattttcaatt 19308976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 21080482 - 21080421
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||||    
T  21080482 cacatatataaacactactagagtgtgtgatctacccaacgtgggacataaaattttcaatt 21080421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 32212126 - 32212065
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||| ||||||||||||||||||    
T  32212126 cacatatataaacactactagagtgtgtgatctacccaatgtgagacataaaattttcaatt 32212065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 43893528 - 43893589
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||| ||||||||||||||||||||    
T  43893528 cacatatataaacactactagagtgtgtgatctacccaatgagggacataaaattttcaatt 43893589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 33238422 - 33238468
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  33238422 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 33238468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 33243599 - 33243645
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  33243599 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 33243645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 47994220 - 47994266
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  47994220 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 47994266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 47999395 - 47999441
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  47999395 tactagagtgtgtgatctacccgatgtgagacataaaattttcaatt 47999441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 21080580 - 21080540
Alignment:
Q  308 cgtcgcgcgcgcgtgtgtcttatatataatttttggcaagc 348  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  21080580 cgtcgcgcgcgcgtgtgtcttatatataatttttagcaagc 21080540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33238362 - 33238410
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  33238362 attctcagttttggagtgaagaatactattcccgagctctcaatttata 33238410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33243539 - 33243587
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  33243539 attctcagttttggagtgaagaatactattcccgagctctcaatttata 33243587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47994160 - 47994208
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  47994160 attctcagttttggagtgaagaatactattcccgagctctcaatttata 47994208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47999335 - 47999383
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  47999335 attctcagttttggagtgaagaatactattcccgagctctcaatttata 47999383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 16538834 - 16538773
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   || || |||||||||||||| |||| |||||||||||||||||||||    
T  16538834 cacatatataaacactattaaagtgtgtgatctactcaatatgggacataaaattttcaatt 16538773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 16626828 - 16626889
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   || || |||||||||||||| |||| |||||||||||||||||||||    
T  16626828 cacatatataaacactattaaagtgtgtgatctactcaatatgggacataaaattttcaatt 16626889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32212455 - 32212419
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagc 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  32212455 attctcggttttggagtgaagaatcccattcccgagc 32212419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 43893295 - 43893346
Alignment:
Q  159 cgcgtgtgaaaaacgtgtgagacttggtc-tccgcgtgcgggaatctcggag 209  Q
    ||||||||||||||||| | |||||| || ||||||||||||||||||||||    
T  43893295 cgcgtgtgaaaaacgtgcgggacttgatcctccgcgtgcgggaatctcggag 43893346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 2234204 - 2234171
Alignment:
Q  315 cgcgcgtgtgtcttatatataatttttggcaagc 348  Q
    ||||| ||||||||||||||||||||||||||||    
T  2234204 cgcgcatgtgtcttatatataatttttggcaagc 2234171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 340
Target Start/End: Complemental strand, 32212283 - 32212191
Alignment:
Q  241 ctgagcaccaaaaaatttatatttctttatagacaagcccaagcccggtccggtcggtc-gacggctgcgtcgcgcgcgcgtgtgtcttatatataattt 339  Q
    ||||||||||||||| | ||||||||||  || |||||| |||||||||||| |||||| |||||| |||||||||      ||||||||||||||||||    
T  32212283 ctgagcaccaaaaaaat-atatttctttgaagccaagcc-aagcccggtccgatcggtcggacggcggcgtcgcgc------gtgtcttatatataattt 32212192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 16538932 - 16538896
Alignment:
Q  308 cgtcgcgcgcgcgtgtgtcttatatataatttttggc 344  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  16538932 cgtcgtgcgcgcgcgtgtcttatatataatttttggc 16538896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 344
Target Start/End: Original strand, 16626730 - 16626766
Alignment:
Q  308 cgtcgcgcgcgcgtgtgtcttatatataatttttggc 344  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  16626730 cgtcgtgcgcgcgcgtgtcttatatataatttttggc 16626766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 37303 - 37513
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  37303 attctcggttttggagtgaagaatctcattcccgagctctctatttatagagaggatttgacctcgttttctccgccgacctggttcgcgacccgccaaa 37402  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgg 198  Q
    || ||||||||||||| |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  37403 ctcagcccacgacccacgtaacggtaa-ccacgacgcggaaacgtggagcggaagcttccgcgtgtgaaaaacgtgtgagacttggtcctccgcgtgcgg 37501  T
Q  199 gaatctcggagc 210  Q
    ||||||||||||    
T  37502 gaatctcggagc 37513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 37640 - 37701
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||| ||||||||||||||||||||||||||||||||||||||||||    
T  37640 cacatatataaacactactggagtgtgtgatctacccaatgtgggacataaaattttcaatt 37701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 3584894 - 3585104
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||     
T  3584894 attctcggttttggagtgaagaatgcaaatcctgagctctctatttatagaggggatttgacctcgttttctctgcctacccggttcgcgacccgccaac 3584993  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgcgtgcggg 199  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  3584994 gttagcccacgacccacgtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctctgcgtgcggg 3585093  T
Q  200 aatctcggagc 210  Q
    |||||| ||||    
T  3585094 aatctcagagc 3585104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 5730398 - 5730608
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||     
T  5730398 attctcggttttggagtgaagaatgcaaatcccgagctctctatttatagaggggatttgacctcattttctccgccgacccggttcgtgacccgccaac 5730497  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgcgtgcggg 199  Q
     ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| | |||||||    
T  5730498 gttagcccacgacccacgtaacggtaacccacgacgcggaaacgtgtagctgaagcttgcacgtgtggaaaacgtgtgagacttggtctctgtgtgcggg 5730597  T
Q  200 aatctcggagc 210  Q
    |||||||||||    
T  5730598 aatctcggagc 5730608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 48246485 - 48246300
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| |||||| |||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||             
T  48246485 attctcggttttgtagtgaagaatcccatttccgaggtctctatttatagagaggatttgacctggttttctccaccgacccggttcgcga--------- 48246395  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgcgtgcggga 200  Q
                ||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||    ||||||||||||||| |||||| |||    
T  48246394 ------------cccagtaacggtaacccacgatgtgaaaacgtggagctgaagcttgcgcgtgtgaaaa---cgtgagacttggtctcagcgtgcagga 48246310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 3585287 - 3585348
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  3585287 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 3585348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 5730757 - 5730818
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  5730757 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 5730818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 5725366 - 5725412
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  5725366 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 5725412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 27711690 - 27711736
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  27711690 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 27711736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 34317960 - 34317914
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  34317960 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 34317914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 36684390 - 36684344
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  36684390 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 36684344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 37404146 - 37404100
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  37404146 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 37404100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 37409265 - 37409219
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  37409265 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 37409219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 48246133 - 48246072
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  48246133 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaaattttaatt 48246072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 11250851 - 11250805
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||    
T  11250851 tactagagtgtgtgatctaaccgatgtgggacataaaattttcaatt 11250805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 27716810 - 27716856
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  27716810 tactagagtgtgtgatctacccgatgtgggacataaaaatttcaatt 27716856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27711630 - 27711678
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  27711630 attctcagttttggagtgaagaatactattcccgagctctcaatttata 27711678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 34318020 - 34317972
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  34318020 attctcagttttggagtgaagaatactattcccgagctctcaatttata 34317972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37409325 - 37409277
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  37409325 attctcagttttggagtgaagaatactattcccgagctctcaatttata 37409277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 5725314 - 5725361
Alignment:
Q  300 gacggctgcgtcg-cgcgcgcgtgtgtcttatatataatttttggcaa 346  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||    
T  5725314 gacggcggcgtcgtcgcgcgcgtgtgtcttatatataatttttggcaa 5725361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 27716754 - 27716798
Alignment:
Q  5 tcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||| | |||||||||||||| |||||||    
T  27716754 tcagttttggagtgaagaatactattcccgagctctcaatttata 27716798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36684450 - 36684402
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    ||||||||||||||||| |||||| | |||||||||||||| |||||||    
T  36684450 attctcagttttggagtcaagaatactattcccgagctctcaatttata 36684402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37404206 - 37404158
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | ||||||| |||||| |||||||    
T  37404206 attctcagttttggagtgaagaatactattcccgggctctcaatttata 37404158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 141; Significance: 9e-74; HSPs: 4)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 8 - 210
Target Start/End: Complemental strand, 13534 - 13331
Alignment:
Q  8 gttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||||||||||||||  ||||    
T  13534 gttttggagtgaagaatcccattcccgagctctctatttatagagaggtttcgaccttgttttctccgctgacccggttcgcgacccgccaaacccagcc 13435  T
Q  108 cacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgggaatctc 205  Q
    ||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||    
T  13434 cacgacccacgtaacggtaa-ccacgacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgtgggacttggtcctccgcgtgcgggaaactc 13336  T
Q  206 ggagc 210  Q
    |||||    
T  13335 ggagc 13331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 18994 - 18835
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| |||||||||| |||||| ||| ||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||| |||||||||||    
T  18994 attctcggttttggagtaaagaataccaatcctgagctctctatttatagaggggattcgacttcgttttctccgtcgacccggttcgtgacccgccaaa 18895  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcg 160  Q
    |  ||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||    
T  18894 cccagcccacgacccacgtaacggtaa-ccacgacgcggaaacgtggagcggaagcttgcg 18835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 13147 - 13086
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  13147 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 13086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 18604 - 18543
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  18604 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 18543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 5e-69; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 34 - 194
Target Start/End: Complemental strand, 17955602 - 17955442
Alignment:
Q  34 gagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcccacgacccagtaacggtaacccacga 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||| |||||||||||||||||||||||    
T  17955602 gagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgactcgcgaacgttagcccatgacccagtaacggtaacccacga 17955503  T
Q  134 cgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgcgt 194  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17955502 cgcggaaatgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgcgt 17955442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 21643068 - 21642941
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| |||    
T  21643068 attctcggttttggagtgaagaatcccattcccgaggtctctatttatagagaggaatttacctcgttttctccgccgacccggttcgcgacccgcgaaa 21642969  T
Q  101 cttagcccacgacccagtaacggtaacc 128  Q
    ||||||||||||||||||||||||||||    
T  21642968 cttagcccacgacccagtaacggtaacc 21642941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 21643443 - 21643316
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| |||    
T  21643443 attctcggttttggagtgaagaatcccattcccgaggtctctatttatagagaggaatttacctcgttttctccgccgacccggttcgcgacccgcgaaa 21643344  T
Q  101 cttagcccacgacccagtaacggtaacc 128  Q
    ||||||||||||||||||||||||||||    
T  21643343 cttagcccacgacccagtaacggtaacc 21643316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 21641560 - 21641441
Alignment:
Q  9 ttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagccc 108  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| |||||||||||    
T  21641560 ttttggagtgaagaatcccattcccgaggtctctatttatagagaggaatttacctcgttttctccgccgacccggttcgcgacccgcgaaacttagccc 21641461  T
Q  109 acgacccagtaacggtaacc 128  Q
    ||||||||||||||||||||    
T  21641460 acgacccagtaacggtaacc 21641441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 21641935 - 21641816
Alignment:
Q  9 ttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagccc 108  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| |||||||||||    
T  21641935 ttttggagtgaagaatcccattcccgaggtctctatttatagagaggaatttacctcgttttctccgccgacccggttcgcgacccgcgaaacttagccc 21641836  T
Q  109 acgacccagtaacggtaacc 128  Q
    ||||||||||||||||||||    
T  21641835 acgacccagtaacggtaacc 21641816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 21642310 - 21642191
Alignment:
Q  9 ttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagccc 108  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| |||||||||||    
T  21642310 ttttggagtgaagaatcccattcccgaggtctctatttatagagaggaatttacctcgttttctccgccgacccggttcgcgacccgcgaaacttagccc 21642211  T
Q  109 acgacccagtaacggtaacc 128  Q
    ||||||||||||||||||||    
T  21642210 acgacccagtaacggtaacc 21642191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 21642685 - 21642566
Alignment:
Q  9 ttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagccc 108  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| |||||||||||    
T  21642685 ttttggagtgaagaatcccattcccgaggtctctatttatagagaggaatttacctcgttttctccgccgacccggttcgcgacccgcgaaacttagccc 21642586  T
Q  109 acgacccagtaacggtaacc 128  Q
    ||||||||||||||||||||    
T  21642585 acgacccagtaacggtaacc 21642566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 24885006 - 24885118
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  24885006 attctcggttttggagtgaagaattccattcccgagctctctatttatagagaggatttgacctcgttttctccgccgacccggttcgcgacccaccaaa 24885105  T
Q  101 cttagcccacgac 113  Q
    |||||||||||||    
T  24885106 cttagcccacgac 24885118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 21643883 - 21643756
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| || |||    
T  21643883 attctcggttttggagtgaagaatcccattcccgaggtctctatttatagagaggaatttacctcgttttctccgccgacccggttcgcgacctgcgaaa 21643784  T
Q  101 cttagcccacgacccagtaacggtaacc 128  Q
    |||||||||||||| |||||| ||||||    
T  21643783 cttagcccacgacctagtaactgtaacc 21643756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 17955295 - 17955234
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  17955295 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 17955234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 21641287 - 21641226
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  21641287 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 21641226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 24885310 - 24885371
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  24885310 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 24885371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 43998707 - 43998646
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  43998707 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 43998646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 43999032 - 43998955
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccg 78  Q
    |||||||||||| |||| ||||||   | |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43999032 attctcagttttagagtaaagaatgtaaatcccgagctctctatttatagaggggatttcacctcgttttctccgccg 43998955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 32016120 - 32016166
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32016120 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 32016166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 42514009 - 42513948
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||||    
T  42514009 cacatatataaacactactagagtgtgtgatctatccaatgtgggacataaaattttcaatt 42513948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 43998932 - 43998883
Alignment:
Q  161 cgtgtgaaaaacgtgtgagacttggtctccgcgtgcgggaatctcggagc 210  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  43998932 cgtgtggaaaacgtgtgagacttggtctccgtgtgcgggaatctcggagc 43998883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 2165541 - 2165495
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  2165541 tactagagtgtgtgatctacccgatgtgagacataaaattttcaatt 2165495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 32010946 - 32010992
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  32010946 tactagagtgtatgatctacccgatgtgggacataaaattttcaatt 32010992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32010886 - 32010934
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  32010886 attctcagttttggagtgaagaatactattcccgagctctcaatttata 32010934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32016060 - 32016108
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  32016060 attctcagttttggagtgaagaatactattcccgagctctcaatttata 32016108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 42514179 - 42514127
Alignment:
Q  159 cgcgtgtgaaaaacgtgtgagacttggt-ctccgcgtgcgggaatctcggagc 210  Q
    ||||||||||||| |||||||||||||| |||||||||||| |||||||||||    
T  42514179 cgcgtgtgaaaaatgtgtgagacttggtcctccgcgtgcggaaatctcggagc 42514127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 43998849 - 43998803
Alignment:
Q  241 ctgagcaccaaaaaatttatatttctttatagacaagcccaagcccgg 288  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  43998849 ctgagcaccaaaaaaat-atatttctttatagacaagcccaagcccgg 43998803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42514222 - 42514180
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctcta 43  Q
    |||||| |||||||||||||||||| |||||||||||||||||    
T  42514222 attctcggttttggagtgaagaatctcattcccgagctctcta 42514180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2165601 - 2165553
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    ||||||| |||||||||||||||| | |||||||||||||| |||||||    
T  2165601 attctcaattttggagtgaagaatactattcccgagctctcaatttata 2165553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 4163379 - 4163182
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| ||||||||||||||||| | | |||||||||||||||||||||||||||||| |||| ||||||||||||||||||            ||||     
T  4163379 attctcggttttggagtgaagaatgcaaatcccgagctctctatttatagaggggatttaaccttgttttctccgccgacccg------------ccaac 4163292  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgcgtgcggga 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4163291 gttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgcgtgcggga 4163192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 28751531 - 28751343
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||             
T  28751531 attctcggttttggagtgaagaatctcattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacctggttcgcga--------- 28751441  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgcgtgcggga 200  Q
                |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28751440 ------------cccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgcgtgcggga 28751353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 4163056 - 4162995
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  4163056 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 4162995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 28751182 - 28751121
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  28751182 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 28751121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 40392686 - 40392732
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  40392686 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 40392732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 42723126 - 42723080
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  42723126 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 42723080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 42728295 - 42728249
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  42728295 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 42728249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 44096722 - 44096768
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  44096722 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 44096768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 44754281 - 44754235
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  44754281 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 44754235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 44759447 - 44759401
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  44759447 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 44759401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 4163153 - 4163106
Alignment:
Q  241 ctgagcaccaaaaaatttatatttctttatagacaagcccaagcccggtc 290  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  4163153 ctgagcaccaaaaaat--atatttctttatagacaagcccaagcccggtc 4163106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40392626 - 40392674
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  40392626 attctcagttttggagtgaagaatactattcccgagctctcaatttata 40392674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42723186 - 42723138
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  42723186 attctcagttttggagtgaagaatactattcccgagctctcaatttata 42723138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42728355 - 42728307
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  42728355 attctcagttttggagtgaagaatactattcccgagctctcaatttata 42728307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44754341 - 44754293
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  44754341 attctcagttttggagtgaagaatactattcccgagctctcaatttata 44754293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44759507 - 44759459
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  44759507 attctcagttttggagtgaagaatactattcccgagctctcaatttata 44759459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 40518196 - 40518149
Alignment:
Q  384 tactagagtgtgtgatctaccca-atgtgggacataaaattttcaatt 430  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  40518196 tactagagtgtgtgatctaccccgatgtgggacataaaattttcaatt 40518149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 40519940 - 40519987
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttat 48  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||||    
T  40519940 attctcagttttggagtgaagaatactattcccgagctctcaatttat 40519987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 40520004 - 40520051
Alignment:
Q  384 tactagagtgtgtgatctaccca-atgtgggacataaaattttcaatt 430  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  40520004 tactagagtgtgtgatctaccccgatgtgggacataaaattttcaatt 40520051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 44096662 - 44096710
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    ||||||||||||||||| |||||| | |||||||||||||| |||||||    
T  44096662 attctcagttttggagtaaagaatactattcccgagctctcaatttata 44096710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40518260 - 40518213
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttat 48  Q
    |||||||||||||||||||||||| | |||| ||||||||| ||||||    
T  40518260 attctcagttttggagtgaagaatactattcacgagctctcaatttat 40518213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 1413854 - 1413710
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  1413854 attctcggttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgtttacttcgccgacccggttcgcgacccgccaaa 1413755  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtg 145  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  1413754 cttagcccacgacccaataacggtaacccacgacgcggaaacgtg 1413710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 36254129 - 36254332
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||  |||| |||||||| ||||||||| |||||||||||||||    
T  36254129 attctcggttttggagtgaagaatcccattcccaagctctctatttatagaggggaattttcctcattttctccaccgacccggctcgcgacccgccaaa 36254228  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtc-tccgcgtgcggg 199  Q
    || |||||||      |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36254229 ctcagcccac------gtaacggtaa-ccacgacgcggaaacgtggagcggaagcttgcgcgtgtgaaaaacgtgtgagacttggtcttccgcgtgcggg 36254321  T
Q  200 aatctcggagc 210  Q
    |||||| ||||    
T  36254322 aatctcagagc 36254332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 26709396 - 26709584
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  26709396 attctcagttttggagtgaagaatgcaaatcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcga--------- 26709486  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgcgtgcggga 200  Q
                ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  26709487 ------------cccagcaacggtaacccacgacgcagaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgtgtgcggga 26709574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 26979130 - 26979318
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  26979130 attctcagttttggagtgaagaatgcaaatcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcga--------- 26979220  T
Q  101 cttagcccacgacccagtaacggtaacccacgacgcggaaacgtggagctgaagcttgcgcgtgtgaaaaacgtgtgagacttggtctccgcgtgcggga 200  Q
                ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  26979221 ------------cccagcaacggtaacccacgacgcagaaacgtggagctgaagcttgcgcgtgtggaaaacgtgtgagacttggtctccgtgtgcggga 26979308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 24776611 - 24776452
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaa 100  Q
    |||||| |||||||||| |||||| ||| ||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||| |||||||||||    
T  24776611 attctcggttttggagtaaagaataccaatcctgagctctctatttatagaggggattcgacttcgttttctccgtcgacccggttcgtgacccgccaaa 24776512  T
Q  101 cttagcccacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcg 160  Q
    |  ||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||    
T  24776511 cccagcccacgacccacgtaacggtaa-ccacgacgcggaaacgtggagcggaagcttgcg 24776452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 24771149 - 24770997
Alignment:
Q  8 gttttggagtgaagaatcccattcccgagctctctatttatagaggggatttgacctcgttttctccgccgacccggttcgcgacccgccaaacttagcc 107  Q
    |||||||||| |||||| ||| ||| ||||||||||||||||||||||||| ||| |||||||||| | |||||||||| | ||||||||||||  ||||    
T  24771149 gttttggagtaaagaataccaatcctgagctctctatttatagaggggattcgacttcgttttctctgtcgacccggtttgtgacccgccaaacccagcc 24771050  T
Q  108 cacgaccca-gtaacggtaacccacgacgcggaaacgtggagctgaagcttgcg 160  Q
    ||||||||| |||||||||| ||||||||||||||||||||||  |||||||||    
T  24771049 cacgacccacgtaacggtaa-ccacgacgcggaaacgtggagcgaaagcttgcg 24770997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 1413512 - 1413444
Alignment:
Q  77 cgacccggttcgcgacccgccaaacttagcccacgacccagtaacggtaacccacgacgcggaaacgtg 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1413512 cgacccggttcgcgacccgccaaacttagcccacgacccagtaacggtaacccacgacgcggaaacgtg 1413444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 24770766 - 24770705
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  24770766 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 24770705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 24776220 - 24776159
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  24776220 cacatatataaacactactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 24776159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 1413557 - 1413507
Alignment:
Q  65 cgttttctccgccgacccggttcgcgacccgccaaacttagcccacgaccc 115  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1413557 cgtttactccgccgacccggttcgcgacccgccaaacttagcccacgaccc 1413507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 1413234 - 1413173
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   |||||||||||||||||||| ||||||||||||||||||||||||||    
T  1413234 cacatatataaacactactagagtgtgtgatctactcaatgtgggacataaaattttcaatt 1413173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 36254503 - 36254564
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||    
T  36254503 cacatatataaacactactagagtgtgtgatctacccaatgtggaacataaaattttcaatt 36254564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 17505320 - 17505366
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  17505320 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 17505366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 17510425 - 17510471
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  17510425 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 17510471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 42019940 - 42019986
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||    
T  42019940 tactagagtgtgtgatctatccgatgtgggacataaaattttcaatt 42019986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 42024720 - 42024766
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||    
T  42024720 tactagagtgtgtgatctatccgatgtgggacataaaattttcaatt 42024766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 43580027 - 43580073
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||    
T  43580027 tactagagtatgtgatctacccgatgtgggacataaaattttcaatt 43580073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17505260 - 17505308
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  17505260 attctcagttttggagtgaagaatactattcccgagctctcaatttata 17505308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17510365 - 17510413
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  17510365 attctcagttttggagtgaagaatactattcccgagctctcaatttata 17510413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41858893 - 41858941
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  41858893 attctcagttttggagtgaagaatactattcccgagctctcaatttata 41858941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42019880 - 42019928
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  42019880 attctcagttttggagtgaagaatactattcccgagctctcaatttata 42019928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 26709674 - 26709735
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   ||||| | ||||| |||||| ||||||||||||||||||||||||||    
T  26709674 cacatatataaacactactacaatgtgtaatctactcaatgtgggacataaaattttcaatt 26709735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 26979408 - 26979469
Alignment:
Q  369 cacatatataaaatttactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||   ||||| | ||||| |||||| ||||||||||||||||||||||||||    
T  26979408 cacatatataaacactactacaatgtgtaatctactcaatgtgggacataaaattttcaatt 26979469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 42024660 - 42024708
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    ||||||| |||||||||||||||| | |||||||||||||| |||||||    
T  42024660 attctcaattttggagtgaagaatactattcccgagctctcaatttata 42024708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 430
Target Start/End: Original strand, 41858960 - 41858997
Alignment:
Q  393 gtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  41858960 gtgtgatctacccgatgtgggacatagaattttcaatt 41858997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 41853846 - 41853882
Alignment:
Q  394 tgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||| |||||||||||| |||||||||||    
T  41853846 tgtgatctacccgatgtgggacatagaattttcaatt 41853882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43579967 - 43580015
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||| ||||| ||| | |||||||||||||| |||||||    
T  43579967 attctcagttttggtgtgaaaaatactattcccgagctctcaatttata 43580015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 3930 - 3976
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  3930 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 3976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3870 - 3918
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  3870 attctcagttttggagtgaagaatactattcccgagctctcaatttata 3918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 26793 - 26839
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  26793 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 26839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 31965 - 32011
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  31965 tactagagtgtgtgatctacccgatgtgggacataaaattttcaatt 32011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26733 - 26781
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||| ||||||||| | |||||||||||||| |||||||    
T  26733 attctcagttttggtgtgaagaatactattcccgagctctcaatttata 26781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31905 - 31953
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||| ||||||||| | |||||||||||||| |||||||    
T  31905 attctcagttttggtgtgaagaatactattcccgagctctcaatttata 31953  T

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Target: scaffold0055 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 3444 - 3490
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||    
T  3444 tactagagtgtgtgatctaccggatgtgggacataaaattttcaatt 3490  T

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Target: scaffold0055; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3384 - 3432
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  3384 attctcagttttggagtgaagaatactattcccgagctctcaatttata 3432  T

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Target: scaffold0052 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 384 - 430
Target Start/End: Complemental strand, 81091 - 81045
Alignment:
Q  384 tactagagtgtgtgatctacccaatgtgggacataaaattttcaatt 430  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||    
T  81091 tactagagtgtgtgatctaccggatgtgggacataaaattttcaatt 81045  T

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Target: scaffold0052; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 81151 - 81103
Alignment:
Q  1 attctcagttttggagtgaagaatcccattcccgagctctctatttata 49  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  81151 attctcagttttggagtgaagaatactattcccgagctctcaatttata 81103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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