View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19821_low_4 (Length: 303)

Name: NF19821_low_4
Description: NF19821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19821_low_4
NF19821_low_4
[»] chr4 (22 HSPs)
chr4 (4-154)||(37341209-37341359)
chr4 (4-136)||(23890912-23891044)
chr4 (205-284)||(10739395-10739474)
chr4 (205-284)||(10953164-10953243)
chr4 (205-284)||(10733302-10733381)
chr4 (205-284)||(10947071-10947150)
chr4 (205-284)||(33458323-33458402)
chr4 (205-284)||(24288011-24288090)
chr4 (205-284)||(6257261-6257340)
chr4 (205-284)||(48160984-48161062)
chr4 (205-284)||(48167203-48167281)
chr4 (205-284)||(33461449-33461527)
chr4 (205-277)||(3769598-3769670)
chr4 (217-281)||(4632419-4632482)
chr4 (205-265)||(49976630-49976690)
chr4 (205-277)||(50168624-50168696)
chr4 (205-276)||(26963397-26963468)
chr4 (214-283)||(44831677-44831746)
chr4 (205-269)||(9237402-9237466)
chr4 (205-283)||(19686384-19686462)
chr4 (219-275)||(50155990-50156046)
chr4 (209-284)||(50427392-50427474)
[»] chr2 (18 HSPs)
chr2 (4-154)||(25889646-25889796)
chr2 (205-284)||(36750439-36750518)
chr2 (205-284)||(28683001-28683080)
chr2 (205-284)||(13456124-13456203)
chr2 (205-284)||(13462065-13462144)
chr2 (205-283)||(13149742-13149819)
chr2 (210-284)||(44716866-44716940)
chr2 (205-284)||(31002401-31002480)
chr2 (205-284)||(31008379-31008458)
chr2 (205-284)||(35090705-35090784)
chr2 (205-284)||(30965352-30965431)
chr2 (205-284)||(35084732-35084811)
chr2 (205-284)||(23343585-23343664)
chr2 (205-278)||(11048609-11048682)
chr2 (205-256)||(35438765-35438816)
chr2 (210-249)||(31651664-31651703)
chr2 (205-261)||(29833255-29833311)
chr2 (173-205)||(35090590-35090622)
[»] scaffold0363 (1 HSPs)
scaffold0363 (205-284)||(675-754)
[»] chr8 (17 HSPs)
chr8 (205-284)||(5542216-5542295)
chr8 (205-284)||(14417965-14418044)
chr8 (205-284)||(9935303-9935382)
chr8 (205-284)||(32890913-32890992)
chr8 (205-284)||(32897037-32897116)
chr8 (205-283)||(7771257-7771335)
chr8 (205-284)||(14799472-14799550)
chr8 (205-284)||(42993060-42993138)
chr8 (210-284)||(22219778-22219852)
chr8 (205-284)||(36818996-36819074)
chr8 (210-284)||(10700054-10700127)
chr8 (205-284)||(1882808-1882888)
chr8 (222-284)||(10705862-10705923)
chr8 (210-281)||(39735613-39735684)
chr8 (205-281)||(39727376-39727443)
chr8 (173-205)||(32891076-32891108)
chr8 (205-241)||(24250170-24250206)
[»] chr7 (17 HSPs)
chr7 (205-284)||(3811225-3811304)
chr7 (205-284)||(3817367-3817446)
chr7 (205-284)||(20238975-20239054)
chr7 (205-284)||(339395-339474)
chr7 (205-284)||(351810-351889)
chr7 (205-284)||(28421015-28421094)
chr7 (205-284)||(42767351-42767430)
chr7 (205-278)||(35148060-35148133)
chr7 (205-284)||(26383650-26383729)
chr7 (205-284)||(5979230-5979309)
chr7 (209-283)||(12804025-12804099)
chr7 (210-283)||(43540010-43540083)
chr7 (204-284)||(30219301-30219381)
chr7 (209-284)||(5849549-5849624)
chr7 (212-261)||(22741988-22742037)
chr7 (205-276)||(18666552-18666622)
chr7 (173-205)||(30219214-30219246)
[»] chr6 (20 HSPs)
chr6 (205-284)||(8650859-8650938)
chr6 (205-284)||(21782809-21782888)
chr6 (205-284)||(4580377-4580456)
chr6 (205-284)||(8662837-8662916)
chr6 (205-284)||(32035342-32035421)
chr6 (205-284)||(21190922-21191001)
chr6 (205-284)||(25354236-25354314)
chr6 (205-283)||(31756271-31756349)
chr6 (205-284)||(25343649-25343727)
chr6 (205-276)||(34603386-34603457)
chr6 (205-276)||(34724663-34724734)
chr6 (205-276)||(21783365-21783436)
chr6 (205-276)||(21789588-21789659)
chr6 (206-276)||(21770615-21770685)
chr6 (205-276)||(21197077-21197148)
chr6 (156-205)||(8662704-8662753)
chr6 (205-278)||(18778614-18778686)
chr6 (205-261)||(17581673-17581729)
chr6 (208-284)||(6098005-6098077)
chr6 (176-205)||(25343816-25343845)
[»] chr3 (26 HSPs)
chr3 (205-284)||(11839781-11839860)
chr3 (205-284)||(17055849-17055928)
chr3 (205-284)||(8331811-8331890)
chr3 (205-284)||(10244390-10244469)
chr3 (205-284)||(10760706-10760785)
chr3 (205-284)||(10766927-10767006)
chr3 (205-284)||(11846119-11846198)
chr3 (205-284)||(38449119-38449198)
chr3 (205-284)||(38455606-38455685)
chr3 (205-283)||(49151637-49151715)
chr3 (205-283)||(49157704-49157782)
chr3 (205-278)||(53069110-53069183)
chr3 (205-284)||(10238268-10238347)
chr3 (205-284)||(17593338-17593417)
chr3 (205-284)||(34300521-34300600)
chr3 (205-284)||(42191276-42191355)
chr3 (205-284)||(42197218-42197297)
chr3 (205-284)||(30051158-30051237)
chr3 (205-284)||(55003468-55003547)
chr3 (205-282)||(48128103-48128180)
chr3 (225-284)||(13445085-13445144)
chr3 (205-266)||(28964910-28964971)
chr3 (209-277)||(12108728-12108796)
chr3 (210-284)||(46656708-46656782)
chr3 (173-205)||(49151799-49151831)
chr3 (173-205)||(38455492-38455524)
[»] chr1 (14 HSPs)
chr1 (205-284)||(25387560-25387639)
chr1 (205-284)||(34740010-34740089)
chr1 (205-281)||(8092902-8092978)
chr1 (205-284)||(25381591-25381670)
chr1 (205-283)||(1078249-1078327)
chr1 (205-283)||(31058070-31058147)
chr1 (205-283)||(31051570-31051647)
chr1 (205-284)||(50306214-50306292)
chr1 (205-276)||(44410042-44410113)
chr1 (205-284)||(12183640-12183718)
chr1 (209-284)||(24926814-24926889)
chr1 (205-284)||(24963758-24963837)
chr1 (205-253)||(27955216-27955264)
chr1 (228-284)||(38152048-38152104)
[»] scaffold0440 (1 HSPs)
scaffold0440 (205-284)||(1250-1329)
[»] scaffold0236 (1 HSPs)
scaffold0236 (205-284)||(5559-5638)
[»] chr5 (22 HSPs)
chr5 (205-284)||(12686235-12686314)
chr5 (205-284)||(12692337-12692416)
chr5 (205-283)||(28525442-28525520)
chr5 (205-283)||(28531538-28531616)
chr5 (205-284)||(41297301-41297380)
chr5 (205-274)||(24054369-24054438)
chr5 (205-277)||(32094216-32094288)
chr5 (205-277)||(32097017-32097089)
chr5 (205-284)||(7389604-7389682)
chr5 (205-285)||(16215230-16215310)
chr5 (205-283)||(30384434-30384511)
chr5 (210-284)||(30772307-30772381)
chr5 (205-284)||(19059820-19059899)
chr5 (205-284)||(19066163-19066242)
chr5 (210-277)||(28542269-28542336)
chr5 (205-273)||(14610184-14610252)
chr5 (215-284)||(20500162-20500231)
chr5 (216-274)||(37896365-37896423)
chr5 (205-279)||(26316848-26316922)
chr5 (205-277)||(26509882-26509953)
chr5 (173-205)||(28531422-28531454)
chr5 (176-205)||(32096903-32096932)
[»] scaffold0012 (2 HSPs)
scaffold0012 (205-284)||(172946-173025)
scaffold0012 (173-205)||(172830-172862)
[»] scaffold0208 (2 HSPs)
scaffold0208 (205-284)||(12420-12499)
scaffold0208 (205-284)||(6547-6626)
[»] scaffold0185 (1 HSPs)
scaffold0185 (206-277)||(5954-6025)
[»] scaffold0085 (1 HSPs)
scaffold0085 (205-277)||(38460-38531)
[»] scaffold1114 (1 HSPs)
scaffold1114 (222-284)||(1112-1174)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 37341209 - 37341359
Alignment:
Q  4 taacagacaaaataatcataaaatagcatcaaatgcattgtttatagagaataagagaaatggacaataaacctttttcttattgtcaccgttgcaagca 103  Q
    |||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||     
T  37341209 taacagacaaaataatcataaaatagtaccaaatgcaatgtttatagagaataagagaaagggacaataaacctttatcttattgtcatcgttgcaagcg 37341308  T
Q  104 acctgtcatagtgaacacaacaacagttcataagcggaaggcttttcattg 154  Q
    |||   || ||||||||||||||| |||||||||| |||||||||||||||    
T  37341309 accgaccacagtgaacacaacaacggttcataagcagaaggcttttcattg 37341359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 23891044 - 23890912
Alignment:
Q  4 taacagacaaaataatcataaaatagcatcaaatgcattgtttatagagaataagagaaatggacaataaacctttttcttattgtcaccgttgcaagca 103  Q
    ||||||||||||||||||| |||||| | ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||      
T  23891044 taacagacaaaataatcatcaaatagtaccaaatacaatgtttatagagaataagagaaatggacaataaacctttatcttattgtcacagttgcaagtg 23890945  T
Q  104 acctgtcatagtgaacacaacaacagttcataa 136  Q
    ||| | || ||||||||||||||||||||||||    
T  23890944 accggccacagtgaacacaacaacagttcataa 23890912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 10739395 - 10739474
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10739395 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 10739474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 10953164 - 10953243
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10953164 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 10953243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 10733302 - 10733381
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10733302 caaataaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 10733381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 10947071 - 10947150
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10947071 caaataaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 10947150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 33458323 - 33458402
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33458323 caaacaaaatattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 33458402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 24288090 - 24288011
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  24288090 caaacaaaacattgaacatgattatgatcgtatctacgacatgtttgatttatcaaggttattaagaattagggtattag 24288011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 6257261 - 6257340
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||| ||||||    
T  6257261 caaacaaaacattgaacatgattatgatcggatctacaacatgtttgatttatcaaggatgttaagaattaggatattag 6257340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 48161062 - 48160984
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  48161062 caaacaaaacattgaacataattatgatcggatctacgacatgtttgatttatcaa-gatattaagaattagggtattag 48160984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 48167281 - 48167203
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  48167281 caaacaaaacattgaacataattatgatcggatctacgacatgtttgatttatcaa-gatattaagaattagggtattag 48167203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 33461449 - 33461527
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||| |||||| || ||||||||||||||||||| |||||||||||||||||||||||    
T  33461449 caaacaaaacattgaacatgattatggtcggatttacgacatgtttgatttatcaa-gatattaagaattagggtattag 33461527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 3769670 - 3769598
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagg 277  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| |||||||    
T  3769670 caaacaaaacattgaacatgattatgatcggatctacgacatgtttcattaatcaaggatattaataattagg 3769598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 4632482 - 4632419
Alignment:
Q  217 tgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtat 281  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  4632482 tgaacatgattatgatcggatctacgacatgtttgatttatcaa-gatattaagaattagggtat 4632419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 49976690 - 49976630
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggata 265  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  49976690 caaacaaaacattgaatatgattatgatcggatctacgacatgtttgatttatcaaggata 49976630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 50168696 - 50168624
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagg 277  Q
    |||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||||| |||||||    
T  50168696 caaacaaaacattgaacatgattatgatcgaatatacgacatgtttgatttatcaagaatattaacaattagg 50168624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 26963397 - 26963468
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattag 276  Q
    ||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||| |||||||||    
T  26963397 caaacaaaacattgaacataagtatgaacggatctacgacatgtttgatttatcaaggatatcaagaattag 26963468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 44831677 - 44831746
Alignment:
Q  214 cattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatta 283  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  44831677 cattgaacatgaatatgatcgaatctacgacatgtttaatttatcaaggatattaagaactagggtatta 44831746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 9237466 - 9237402
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaa 269  Q
    |||||| ||||||||| ||||||||| |||||| || |||||||||||||||||||| |||||||    
T  9237466 caaacagaacattgaatatgattatgctcggatttacgacatgtttgatttatcaagtatattaa 9237402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 19686384 - 19686462
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatta 283  Q
    ||||||||| ||||||| | ||||| ||||||||||  ||||| |||||| |||||| |||||||||||| ||||||||    
T  19686384 caaacaaaatattgaacgtaattatcatcggatctacaacatgcttgattaatcaagcatattaagaattcgggtatta 19686462  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 50156046 - 50155990
Alignment:
Q  219 aacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaatta 275  Q
    ||||| |||| |||||||| || |||||||||||||||||||| ||||||| |||||    
T  50156046 aacataattaagatcggatatacgacatgtttgatttatcaagaatattaacaatta 50155990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 50427474 - 50427392
Alignment:
Q  209 caaaacattgaacatgattatgatcggatctatgacatgt--------ttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||| |||||||||||||||| || |||||||        ||||||||||||| | ||||||||||||||||||||    
T  50427474 caaaacattgaa-atgattatgatcggatgtacgacatgtttaatttattgatttatcaagaagattaagaattagggtattag 50427392  T

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Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 25889646 - 25889796
Alignment:
Q  4 taacagacaaaataatcataaaatagcatcaaatgcattgtttatagagaataagagaaatggacaataaacctttttcttattgtcaccgttgcaagca 103  Q
    |||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||     
T  25889646 taacagacaaaataatcataaaatagtaccaaatgcaatgtttatagagaataagagaaagggacaataaacctttatcttattgtcatcgttgcaagcg 25889745  T
Q  104 acctgtcatagtgaacacaacaacagttcataagcggaaggcttttcattg 154  Q
    |||   || ||||||||||||||| |||||||||| |||||||||||||||    
T  25889746 accgaccacagtgaacacaacaactgttcataagcagaaggcttttcattg 25889796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 36750518 - 36750439
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36750518 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 36750439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 28683001 - 28683080
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  28683001 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggttattaagaattagggtattag 28683080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 13456203 - 13456124
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  13456203 caaacaaaacattgaacctgattatgatcggatctacgacatgtttgatttatcaagggtattaagaattagggtattag 13456124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 13462144 - 13462065
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  13462144 caaacaaaacattgaacctgattatgatcggatctacgacatgtttgatttatcaagggtattaagaattagggtattag 13462065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 13149742 - 13149819
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatta 283  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  13149742 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaa-gatattaagaattagggtatta 13149819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 44716866 - 44716940
Alignment:
Q  210 aaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  44716866 aaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaaggatattaagaattagggtattag 44716940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 31002480 - 31002401
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||    
T  31002480 caaacaaaatattgaacatgattatgatcggatctacgacatgtttgatttatcaagaatatcaagaattagggtattag 31002401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 31008458 - 31008379
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||    
T  31008458 caaacaaaatattgaacatgattatgatcggatctacgacatgtttgatttatcaagaatatcaagaattagggtattag 31008379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 35090705 - 35090784
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| |||||||    
T  35090705 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaagaatattaacaattagtgtattag 35090784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 30965431 - 30965352
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||  || |||||||||||||||||||    
T  30965431 caaacaaaatattgaacatgattatgatcggatctacgacatgtttgatttatcaattattttaagaattagggtattag 30965352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 35084732 - 35084811
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| |||||||    
T  35084732 caaacaaaacattgaaaatgattatgatcggatctacgacatgtttgatttatcaagaatattaacaattagtgtattag 35084811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 23343664 - 23343585
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||| || |||||||||    
T  23343664 caaacaaaacattgaacatgaatatgaacgaatctacgacatgtttgatttatcaaggatattaagagttggggtattag 23343585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 11048609 - 11048682
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattaggg 278  Q
    |||||||||||||||||||||||||||| |||| || | |||||||||| || |||||||||||||||||||||    
T  11048609 caaacaaaacattgaacatgattatgattggatatacgtcatgtttgatgtaccaaggatattaagaattaggg 11048682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 35438765 - 35438816
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgattta 256  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  35438765 caaataaaacattgaacatgattatgatcggatctacgacatgtttgattta 35438816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 249
Target Start/End: Complemental strand, 31651703 - 31651664
Alignment:
Q  210 aaaacattgaacatgattatgatcggatctatgacatgtt 249  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  31651703 aaaacattgaacatgattatgatcggatttatgacatgtt 31651664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 29833311 - 29833255
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaag 261  Q
    |||| |||| ||||||||| |||||||||||||| |  |||||||||||||||||||    
T  29833311 caaataaaatattgaacataattatgatcggatcgacaacatgtttgatttatcaag 29833255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 35090590 - 35090622
Alignment:
Q  173 ttaatcccaataaatcaaacatgaagaccgctc 205  Q
    |||||| ||||||||||||||||||||||||||    
T  35090590 ttaatctcaataaatcaaacatgaagaccgctc 35090622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 675 - 754
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  675 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 5542216 - 5542295
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5542216 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 5542295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 14418044 - 14417965
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14418044 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 14417965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 9935382 - 9935303
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9935382 caaacaaaacattgaatatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 9935303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 32890992 - 32890913
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  32890992 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaaggatattaagaattagggtattag 32890913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 32897116 - 32897037
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  32897116 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaaggatattaagaattagggtattag 32897037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 7771335 - 7771257
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatta 283  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  7771335 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaaggatattaagaattagggtatta 7771257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 14799472 - 14799550
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  14799472 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaa-gatattaagaattagggtattag 14799550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 42993060 - 42993138
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  42993060 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaa-gatattaagaattagggtattag 42993138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 22219778 - 22219852
Alignment:
Q  210 aaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22219778 aaaactttgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 22219852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 36819074 - 36818996
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  36819074 caaacaaaacattgaatatgattatgatcggatctacgacatgtttgatttatcaa-gatattaagaattagggtattag 36818996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 10700127 - 10700054
Alignment:
Q  210 aaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  10700127 aaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaa-gatattaagaattagggtattag 10700054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 1882808 - 1882888
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatcta-tgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  1882808 caaacaaaacattgaacatgaatatgaacggatctaatgacatgtttgatttatcaaggatgttaagaattagggtattag 1882888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 10705923 - 10705862
Alignment:
Q  222 atgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  10705923 atgattatgatcggatctacgacatgtttgatttatcaa-gatattaagaattagggtattag 10705862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 39735613 - 39735684
Alignment:
Q  210 aaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtat 281  Q
    |||| |||||||||||||||||| | ||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  39735613 aaaatattgaacatgattatgattgtatctacgacatgtttgatttatcaaagatattaagaactagggtat 39735684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 39727376 - 39727443
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtat 281  Q
    |||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  39727376 caaacaaaacattgaacatgattatgatc---------acatgtttgatttatcaaggatattaagaattagggtat 39727443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 32891108 - 32891076
Alignment:
Q  173 ttaatcccaataaatcaaacatgaagaccgctc 205  Q
    |||||||||||||||||||||||||||||||||    
T  32891108 ttaatcccaataaatcaaacatgaagaccgctc 32891076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 24250206 - 24250170
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctat 241  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  24250206 caaacaaaatattgaacattattatgatcggatctat 24250170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 3811225 - 3811304
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3811225 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 3811304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 3817367 - 3817446
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3817367 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 3817446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 20239054 - 20238975
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20239054 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 20238975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 339474 - 339395
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  339474 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattaggctattag 339395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 351889 - 351810
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  351889 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattaggctattag 351810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 28421015 - 28421094
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  28421015 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattaggctattag 28421094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 42767351 - 42767430
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  42767351 caaacaaaatattgaacatgattatgatcggatctacgacatatttgatttatcaaggatattaagaattagggtattag 42767430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 35148060 - 35148133
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattaggg 278  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  35148060 caaacaaaacattgaacatgattatgatcggatctacgacacgtttgatttatcaaggatattaagaattaggg 35148133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 26383729 - 26383650
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||    
T  26383729 caaacaaaatattgaacatgatcatgatcggatctacgacatgtttgatttatcaagcatactaagaattagggtattag 26383650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 5979230 - 5979309
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||  |||||||||||||||||| ||||||| |||||||||||||||| |||||| |||||||||||||||||||    
T  5979230 caaacaaactattgaacatgattatgattggatctacgacatgtttgatttattaaggatgttaagaattagggtattag 5979309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 283
Target Start/End: Complemental strand, 12804099 - 12804025
Alignment:
Q  209 caaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatta 283  Q
    |||||||||||||||||  |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  12804099 caaaacattgaacatgaacatgaacggatctacgacatgtttgatttatcaagaatattaagaattagggtatta 12804025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 43540083 - 43540010
Alignment:
Q  210 aaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatta 283  Q
    |||| ||||||||||||||||||||||||||  ||||||||||||||||||| ||||||| |||||||||||||    
T  43540083 aaaatattgaacatgattatgatcggatctacaacatgtttgatttatcaagaatattaaaaattagggtatta 43540010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 30219301 - 30219381
Alignment:
Q  204 tcaaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||| |||||||||| ||||| |||||||| |||||||||||||||| || |||||||||||||| ||||||||    
T  30219301 tcaaacaaaacgttgaacatgaatatgaacggatctacgacatgtttgatttattaaagatattaagaattatggtattag 30219381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 5849624 - 5849549
Alignment:
Q  209 caaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  5849624 caaaacattgaacataaatatgaacggatctacgacatgtttgatttatcaaggatatcaagaattaggatattag 5849549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 22741988 - 22742037
Alignment:
Q  212 aacattgaacatgattatgatcggatctatgacatgtttgatttatcaag 261  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22741988 aacattgaacatgattatgatcggatctacgacatgtttgatttatcaag 22742037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 18666552 - 18666622
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattag 276  Q
    ||||||||||||||||| ||||||||||| ||| || ||||||||||||||| ||| |||||||| ||||||    
T  18666552 caaacaaaacattgaacttgattatgatcagat-tacgacatgtttgatttagcaatgatattaataattag 18666622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 30219214 - 30219246
Alignment:
Q  173 ttaatcccaataaatcaaacatgaagaccgctc 205  Q
    ||||||||||||||||||||||||| |||||||    
T  30219214 ttaatcccaataaatcaaacatgaataccgctc 30219246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 8650859 - 8650938
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8650859 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 8650938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 21782809 - 21782888
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21782809 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 21782888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 4580377 - 4580456
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  4580377 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaaggatattaagaattagggtattag 4580456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 8662837 - 8662916
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  8662837 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattaggctattag 8662916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 32035342 - 32035421
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  32035342 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggttattaagaattagggtattag 32035421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 21190922 - 21191001
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| || || ||||||||||||| |||||||||||||||||||||||    
T  21190922 caaacaaaacattgaacatgattatgatcggatctacgatatatttgatttatcaaagatattaagaattagggtattag 21191001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 25354314 - 25354236
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  25354314 caaacaaagcattgaacatgattatgatcggatctacgacatgtttgatttatcaa-gatattaagaattagggtattag 25354236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 31756271 - 31756349
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatta 283  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  31756271 caaataaaacattgaacatgattataatcggatctacgacatgtttgaattatcaaggatattaagaattagggtatta 31756349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 25343727 - 25343649
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||    
T  25343727 caaacaaaacattgaacatgattatgatcggatctacgacatttttgatttatcaa-gatattaagaattagagtattag 25343649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 34603386 - 34603457
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattag 276  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  34603386 caaacaaagcattgaacataattatgatcggatctatggcatgtttgatttatcaaggatattaacaattag 34603457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 34724663 - 34724734
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattag 276  Q
    |||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  34724663 caaacaaagcattgaacataattatgatcggatctatggcatgtttgatttatcaaggatattaacaattag 34724734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 21783365 - 21783436
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattag 276  Q
    ||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||| |||||||||    
T  21783365 caaacaaaacattgaacataaatatgaacggatctacgacatgtttgatttatcaaggatatcaagaattag 21783436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 21789588 - 21789659
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattag 276  Q
    ||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||| |||||||||    
T  21789588 caaacaaaacattgaacataaatatgaacggatctacgacatgtttgatttatcaaggatatcaagaattag 21789659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 21770615 - 21770685
Alignment:
Q  206 aaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattag 276  Q
    |||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||| |||||||||    
T  21770615 aaacaaaacattgaacataaatatgaacggatctacgacatgtttgatttatcaaggatatcaagaattag 21770685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 276
Target Start/End: Original strand, 21197077 - 21197148
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattag 276  Q
    ||||||||||||||||||| | ||||| ||||||||  |||||||||||||||||||||||| |||||||||    
T  21197077 caaacaaaacattgaacataagtatgaacggatctacaacatgtttgatttatcaaggatatcaagaattag 21197148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 8662704 - 8662753
Alignment:
Q  156 aaatagtagaattaaggttaatcccaataaatcaaacatgaagaccgctc 205  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  8662704 aaataatagaattaaggttaatcccaataaatcaaacataaagaccgctc 8662753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 18778686 - 18778614
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattaggg 278  Q
    |||||||||| |||||||| |||||||||||||||| ||| | |||||||||||||  ||||||||||||||||    
T  18778686 caaacaaaacgttgaacataattatgatcggatctacgacgtatttgatttatcaa-tatattaagaattaggg 18778614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 17581729 - 17581673
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaag 261  Q
    ||||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||    
T  17581729 caaacaaaacattgaacatgattattataggatctacgacatgtttgatttaccaag 17581673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 6098077 - 6098005
Alignment:
Q  208 acaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||    || |||||||| ||| ||||||||||||||| ||| |||||||||||||||||||    
T  6098077 acaaaacattgaacatgaa---gaacggatctacgacgtgtttgatttatcaa-gatgttaagaattagggtattag 6098005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 25343845 - 25343816
Alignment:
Q  176 atcccaataaatcaaacatgaagaccgctc 205  Q
    ||||||||||||||||||||||||||||||    
T  25343845 atcccaataaatcaaacatgaagaccgctc 25343816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 11839781 - 11839860
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11839781 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 11839860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 17055849 - 17055928
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17055849 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 17055928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 8331890 - 8331811
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  8331890 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattaggctattag 8331811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 10244390 - 10244469
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  10244390 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattaggctattag 10244469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 10760706 - 10760785
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10760706 caaataaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 10760785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 10766927 - 10767006
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10766927 caaacaaaacattgaacatgattatgaccggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 10767006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 11846119 - 11846198
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  11846119 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaagtatattaagaattagggtattag 11846198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 38449119 - 38449198
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  38449119 caaacaaaacattgaacatgattatgatcggatctacaacatgtttgatttatcaaggatattaagaattagggtattag 38449198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 38455606 - 38455685
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  38455606 caaacaaaacattgaacatgattatgatcggatctacaacatgtttgatttatcaaggatattaagaattagggtattag 38455685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 49151715 - 49151637
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatta 283  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  49151715 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttattaaggatattaagaattagggtatta 49151637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 49157782 - 49157704
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatta 283  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  49157782 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttattaaggatattaagaattagggtatta 49157704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 53069110 - 53069183
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattaggg 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53069110 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaatcaggg 53069183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 10238268 - 10238347
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  10238268 caaacaaaacattgaacatgattatgatcagatctacgacatgtttgatttatcaaggatattaagaattaggctattag 10238347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 17593338 - 17593417
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  17593338 caaacaaaacattgaacatgattatgatcggatctacgacatgtttaatttatcaagaatattaagaattagggtattag 17593417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 34300600 - 34300521
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||    
T  34300600 caaacaaaacattgaacatgattatgatcggatctacgacatatttgatttataaaggatattaagaattagggtattag 34300521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 42191276 - 42191355
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  42191276 caaacaaaacattgaacctgattatgatcggatctacgacatgtttgatttatcaagggtattaagaattagggtattag 42191355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 42197218 - 42197297
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  42197218 caaacaaaacattgaacctgattatgatcggatctacgacatgtttgatttatcaagggtattaagaattagggtattag 42197297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 30051158 - 30051237
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30051158 caaacaaaatattgaacatgattataatcagatctacgacatgtttgatttatcaaggatattaagaattagggtattag 30051237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 55003468 - 55003547
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  55003468 caaataaaacattgaacatgattatgatcggatctacgacatgtttaatttatcaagtatattaagaattagggtattag 55003547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 205 - 282
Target Start/End: Original strand, 48128103 - 48128180
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatt 282  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||||||||||||||||    
T  48128103 caaacaaaacattgaacatgattatgatcggttctacgacatgtttgatttattaagaatattaagaattagggtatt 48128180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 13445144 - 13445085
Alignment:
Q  225 attatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13445144 attatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 13445085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 28964971 - 28964910
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatat 266  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  28964971 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaagatat 28964910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 12108728 - 12108796
Alignment:
Q  209 caaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagg 277  Q
    |||||||||||| |||||||||||  |||||| |||||||||||||||||||||||||||| |||||||    
T  12108728 caaaacattgaatatgattatgatttgatctaagacatgtttgatttatcaaggatattaacaattagg 12108796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 46656782 - 46656708
Alignment:
Q  210 aaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||| || || |||||||||||||||| || |||||||||||||||| |||||| ||||| ||||||||||    
T  46656782 aaaacattcaatataattatgatcggatctacgatatgtttgatttatcaatgatattgagaatgagggtattag 46656708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 49151831 - 49151799
Alignment:
Q  173 ttaatcccaataaatcaaacatgaagaccgctc 205  Q
    |||||||||||||||||||||||||||||||||    
T  49151831 ttaatcccaataaatcaaacatgaagaccgctc 49151799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 38455492 - 38455524
Alignment:
Q  173 ttaatcccaataaatcaaacatgaagaccgctc 205  Q
    ||||||| |||||||||||||||||||||||||    
T  38455492 ttaatcctaataaatcaaacatgaagaccgctc 38455524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 25387560 - 25387639
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25387560 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 25387639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 34740089 - 34740010
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34740089 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 34740010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 8092902 - 8092978
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtat 281  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8092902 caaataaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaatttgggtat 8092978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 25381591 - 25381670
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||    
T  25381591 caaacaaaacattgaacatgattatgatcggatctacgaaatgtttgatttaccaaggatattaagaattagggtattag 25381670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 1078327 - 1078249
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatta 283  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||    
T  1078327 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttaccaagaatattaagaattagggtatta 1078249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 31058147 - 31058070
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatta 283  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  31058147 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaa-gatattaagaattagggtatta 31058070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 31051647 - 31051570
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatta 283  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  31051647 caaacaaaacattgaacatgattatgattggatctacgacatgtttgatttatcaa-gatattaagaattagggtatta 31051570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 50306292 - 50306214
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  50306292 caaacaaaacattgaacatgattataatcggatctacgacatgtttgatttatcaa-gatattaagaattaggctattag 50306214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 205 - 276
Target Start/End: Complemental strand, 44410113 - 44410042
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattag 276  Q
    ||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||| |||||||||    
T  44410113 caaacaaaacattgaacataaatatgaacggatctacgacatgtttgatttatcaaggatatcaagaattag 44410042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 12183640 - 12183718
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||| ||||||||| |||||||| ||||||| ||||||||||||||||||| ||||||||||||| | |||||||    
T  12183640 caaacaaaatattgaacataattatgattggatctacgacatgtttgatttatcaa-gatattaagaatttgagtattag 12183718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 284
Target Start/End: Original strand, 24926814 - 24926889
Alignment:
Q  209 caaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||| | ||||| |||||||| |||||||||||||||||||| |||||||||||||  |||||||    
T  24926814 caaaacattgaacattaatatgaacggatctacgacatgtttgatttatcaagaatattaagaattaacgtattag 24926889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 24963758 - 24963837
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||| ||| |||||||||  |||||||    
T  24963758 caaacaaaacattgaacatgaatatgaacggatctacgccatgtttgatttatcaagaatagtaagaattaaagtattag 24963837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 27955264 - 27955216
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgat 253  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  27955264 caaacaaaacattgaacatgattatgatcggatctacaacatgtttgat 27955216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 38152048 - 38152104
Alignment:
Q  228 atgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||| |||||| |||||||||||||||||||  ||||||||||||||||||||||    
T  38152048 atgatcagatctacgacatgtttgatttatcaaacatattaagaattagggtattag 38152104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 1250 - 1329
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  1250 caaacaaaacattgaacatgattatgatcggatctacgatatgtttgatttatcaaggatattaagaattagggtattag 1329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 5638 - 5559
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  5638 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattaggctattag 5559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 12686235 - 12686314
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  12686235 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattaggctattag 12686314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 12692337 - 12692416
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  12692337 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaattaggctattag 12692416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 28525442 - 28525520
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatta 283  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  28525442 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttattaaggatattaagaattagggtatta 28525520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 28531538 - 28531616
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatta 283  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  28531538 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttattaaggatattaagaattagggtatta 28531616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 41297380 - 41297301
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  41297380 caaacaaaacattgaacataattatgatcggatctacgacatgtttgatttatcaaggatataaagaattagggtattag 41297301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 205 - 274
Target Start/End: Complemental strand, 24054438 - 24054369
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaatt 274  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24054438 caaacaaaacattgaacatgattatgatcggatctacgacatgtttgatttatcaaggatattaagaatt 24054369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 32094216 - 32094288
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagg 277  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  32094216 caaacaaaacattgaacatgattatgataggatctacgacatgtttgatttatcaaggatattaagaattagg 32094288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 32097017 - 32097089
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagg 277  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  32097017 caaacaaaacattgaacatgattatgataggatctacgacatgtttgatttatcaaggatattaagaattagg 32097089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 7389604 - 7389682
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||    
T  7389604 caaacaaaacattgaacatgattatgatcggatccacgacatgtttgatttatcaa-gatattaagaattagggtattag 7389682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 16215230 - 16215310
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattagt 285  Q
    ||||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||    
T  16215230 caaacaaaacatttaacatgattatgattggatctacgaaatgtttgatttatcaaggatattaaaaattagggtattagt 16215310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 30384434 - 30384511
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtatta 283  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||    
T  30384434 caaacaaaacattgaacacgattatgatcggatcta-gacatgtctgatttatcaaggatattaagaataagggtatta 30384511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 30772381 - 30772307
Alignment:
Q  210 aaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||| |||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||    
T  30772381 aaaacaatgaacatgattatgatcggatcgacaacatgtttgatttatcaaggatattaagaattagggtattag 30772307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 19059820 - 19059899
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||| ||| ||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19059820 caaacaaaatattaaacatgaatataaacggatctacgacatgtttgatttatcaaggatattaagaattagggtattag 19059899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 19066163 - 19066242
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||| | ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  19066163 caaacaaaacattaagcatgaatatgaacggatctacgacatgtttgatttatcaaggatattaagaattatggtattag 19066242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 28542336 - 28542269
Alignment:
Q  210 aaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagg 277  Q
    ||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  28542336 aaaacattgaacatgattatgatcgaaactacgacatgtttgatttatcaaggatattaagaattagg 28542269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 14610252 - 14610184
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaat 273  Q
    |||| ||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  14610252 caaataaaccattgaacatgattatgatcggatttacgacatgtttgatttatcaaggatattaagaat 14610184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 215 - 284
Target Start/End: Complemental strand, 20500231 - 20500162
Alignment:
Q  215 attgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||||||| |||||||||| |||||||    
T  20500231 attgaacatgattatgatcggatctacgacatacttgatttatcaaggatactaagaattagagtattag 20500162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 37896365 - 37896423
Alignment:
Q  216 ttgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaatt 274  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| ||||    
T  37896365 ttgaacatgattatgatcggatctacgacatgattgatttatcaagaatattaataatt 37896423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 26316848 - 26316922
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggt 279  Q
    |||| |||||||||||||| | |||||| ||||||| ||||||||||||||||| | | |||||| |||||||||    
T  26316848 caaaaaaaacattgaacattaatatgattggatctaggacatgtttgatttatctacggtattaataattagggt 26316922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 26509953 - 26509882
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagg 277  Q
    ||||||||||||||||||| ||||||||   | ||| ||||| ||||||| ||||| ||||||||||||||||    
T  26509953 caaacaaaacattgaacataattatgatataaactacgacatatttgattcatcaa-gatattaagaattagg 26509882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 28531422 - 28531454
Alignment:
Q  173 ttaatcccaataaatcaaacatgaagaccgctc 205  Q
    |||||||||||||||||||||||||||||||||    
T  28531422 ttaatcccaataaatcaaacatgaagaccgctc 28531454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 32096903 - 32096932
Alignment:
Q  176 atcccaataaatcaaacatgaagaccgctc 205  Q
    ||||||||||||||||||||||||||||||    
T  32096903 atcccaataaatcaaacatgaagaccgctc 32096932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 172946 - 173025
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  172946 caaacaaaacattgaaaatgattatgatcggatctacgacatgtttaatttatcaaggatattaagaattaggatattag 173025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 172830 - 172862
Alignment:
Q  173 ttaatcccaataaatcaaacatgaagaccgctc 205  Q
    |||||||||||||||||||||||||||||||||    
T  172830 ttaatcccaataaatcaaacatgaagaccgctc 172862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 12499 - 12420
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||| |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  12499 caaataaaacattgaacataattatgatcgaatctacgacatgtttgatttatcaaggatattaagaattaggctattag 12420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 6626 - 6547
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    |||||||||||||||||||||||||||  | |||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  6626 caaacaaaacattgaacatgattatgactgaatctacaacatgtttgatttatcaaggatattaagaattaggctattag 6547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 277
Target Start/End: Complemental strand, 6025 - 5954
Alignment:
Q  206 aaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagg 277  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||  ||||||  |||||||    
T  6025 aaacaaaacattgaacatgaatatgatcggatctacgacatgtttgatttatcaaaaatattattaattagg 5954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 38531 - 38460
Alignment:
Q  205 caaacaaaacattgaacatgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagg 277  Q
    |||||||||||||||||||  |||||||||||||||  ||||||||| ||||||||| ||||||| |||||||    
T  38531 caaacaaaacattgaacatagttatgatcggatctacaacatgtttg-tttatcaagaatattaataattagg 38460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 1174 - 1112
Alignment:
Q  222 atgattatgatcggatctatgacatgtttgatttatcaaggatattaagaattagggtattag 284  Q
    ||||||||||||||||| | ||||||||||| |||||| | ||||||| |||||| |||||||    
T  1174 atgattatgatcggatcaacgacatgtttgacttatcatgcatattaacaattagagtattag 1112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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