View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19822_high_9 (Length: 248)
Name: NF19822_high_9
Description: NF19822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19822_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 7141544 - 7141312
Alignment:
| Q |
1 |
gggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7141544 |
gggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtctta |
7141445 |
T |
|
| Q |
101 |
attcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatac |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7141444 |
attcagcttgtgccttctccctcactcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatac |
7141345 |
T |
|
| Q |
201 |
atcctgaaattatagaagaacatgtatagaatt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
7141344 |
atcctgaaattatagaagaacatgtatagaatt |
7141312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 7154314 - 7154105
Alignment:
| Q |
1 |
gggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtctta |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||| |||||| | || ||||| |||| |||||| || ||| || |||||||||| ||||| |
|
|
| T |
7154314 |
gggtgtaacctcattgtttctttgatcactaacttaaagtaagttagttcatttagatcagattcagatattattttctttcctttgaatgcttctctta |
7154215 |
T |
|
| Q |
101 |
attcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatac |
200 |
Q |
| |
|
|||||||||||| || | ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
7154214 |
gttcagcttgtgctttttctctcacacttggatttttcatcatttctgacatagcccactctattgttgtcgatgttgtatcagttccggcaacaaatac |
7154115 |
T |
|
| Q |
201 |
atcctgaaat |
210 |
Q |
| |
|
||||||||| |
|
|
| T |
7154114 |
gtcctgaaat |
7154105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 7131732 - 7131652
Alignment:
| Q |
89 |
atgcttgtcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgttg |
169 |
Q |
| |
|
|||||| ||||| ||||||||||||||| ||| |||| ||||| |||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
7131732 |
atgcttctcttatttcagcttgtgccttgttcatcacacttgggtttttcatcagttctgacatggcccatactattgttg |
7131652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 12425437 - 12425604
Alignment:
| Q |
1 |
gggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtctta |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| | ||||| | || |||| | ||||||||| | |||||| || | |||| ||||| |
|
|
| T |
12425437 |
gggtgtaacctcagggtttctttgatcactaacttcaagtacccaagtttatgtagatcactctcatatattctcttcttacctttaacagcttctctta |
12425536 |
T |
|
| Q |
101 |
attcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgtt |
168 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| | |||||||||||||| ||||||||| |
|
|
| T |
12425537 |
tttcagcttgtgccttcttcatcactcttgggtttttcattaactctgacatagcccactctattgtt |
12425604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 12268248 - 12268081
Alignment:
| Q |
1 |
gggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtctta |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| |||||||| |||| | | |||| ||||||| ||| | |||||| || | ||| ||||| |
|
|
| T |
12268248 |
gggtgtaacctcagggtttctttgatcactgacttcaagtaactaagttcatgcaaatcactttcataaattctcttcttacctttacaaacttctctta |
12268149 |
T |
|
| Q |
101 |
attcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgtt |
168 |
Q |
| |
|
|||||||||||| ||| |||||||||| || |||||||| | |||||||||||||| ||||||||| |
|
|
| T |
12268148 |
tttcagcttgtgctttcatcctcactctagggtttttcattaactctgacatagcccaatctattgtt |
12268081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 12438646 - 12438728
Alignment:
| Q |
124 |
actcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatacatcctg |
206 |
Q |
| |
|
|||||||||||||||| ||||||||| | |||||||||| ||||| | |||||| || ||||||||| ||||| |||||| |
|
|
| T |
12438646 |
actcttggatttttcaacatttctgaaaaggcccattctaaagttgtagctgatgtcccacttccagcaaaaaatatatcctg |
12438728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 55958761 - 55958833
Alignment:
| Q |
96 |
tcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgtt |
168 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
55958761 |
tcttatttcagattgtgccttcttcatcactcttgggtttttcatcaactctgacattgcccagtctattgtt |
55958833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 55955110 - 55955274
Alignment:
| Q |
1 |
gggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtctta |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| |||||||| |||| | || |||| | ||||||||| | || || || | |||| ||||| |
|
|
| T |
55955110 |
gggtgtaacctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctttttccctttaacagcttctctta |
55955209 |
T |
|
| Q |
101 |
attcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctatt |
165 |
Q |
| |
|
||| | |||||| |||||| ||||||||| |||||||||| |||||||||||||| |||||| |
|
|
| T |
55955210 |
tttcggattgtgctttcttcatcactcttgagtttttcatcaactctgacatagcccactctatt |
55955274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University