View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19822_low_1 (Length: 573)
Name: NF19822_low_1
Description: NF19822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19822_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 13 - 419
Target Start/End: Complemental strand, 34653715 - 34653309
Alignment:
| Q |
13 |
ataatactaagagaaagaatcggagtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagct |
112 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34653715 |
ataatactaagagaaagaatcggagtaatagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagct |
34653616 |
T |
|
| Q |
113 |
gatgacgaattctacgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34653615 |
gatgacgaattctacgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgag |
34653516 |
T |
|
| Q |
213 |
gaaatggatgggtatgctccaatgatgttcaatggtgatgatggaatggcaagtggatctggcaccacaacgagttatgattttggaacatatggaatgg |
312 |
Q |
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| T |
34653515 |
gaaattgatgggtatgctccaatgatgttcaatggtgatgatggaatggcaagtggatctggcaccacaacgagttatgattttggaacatatggaatgg |
34653416 |
T |
|
| Q |
313 |
agttttttcctgaggttccaatgaagcaggaaattgatttcatgggtatgatctatagaaatccttaaggcgagtatggtttatgactaatgaagttttc |
412 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34653415 |
agttttttcccgaggttccaatgaagcaggaaattgatttcatgggtatgatctatagaaatccttaaggcgagtatggtttatgactaatgaagttttc |
34653316 |
T |
|
| Q |
413 |
atggatc |
419 |
Q |
| |
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||||||| |
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| T |
34653315 |
atggatc |
34653309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 491 - 531
Target Start/End: Complemental strand, 34653238 - 34653198
Alignment:
| Q |
491 |
agagttattttgttttgcttagtttccttgtggatgcaact |
531 |
Q |
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| T |
34653238 |
agagttattttgttttgcttagtttccttgtggatgcaact |
34653198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 4e-64; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 37 - 381
Target Start/End: Complemental strand, 17173922 - 17173578
Alignment:
| Q |
37 |
gtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacgaattctacgagcgtgat |
136 |
Q |
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|||| ||||||||||||| ||| || ||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||||| |||| |
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| T |
17173922 |
gtaagagttcaaagggaatacttcttctgaaatacataatggaagtcaccgatgctaaggaagttgaaaaggagccgatgacgtattctacgagcatgat |
17173823 |
T |
|
| Q |
137 |
gaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgaggaaatggatgggtatgctccaatg |
236 |
Q |
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| | || ||||| | || ||||||||||| ||||||||||||| ||||||||||| || |||| | | |||| || ||||| ||||||| |
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| T |
17173822 |
ggatattaaaaatcaactgaattttgaaagctcaaagagtgattttagaactgaaggtttgactactccagagaacaaaatttgtgagtatgttccaatg |
17173723 |
T |
|
| Q |
237 |
atgttcaatggtgatgatggaatggcaagtggatctggcaccacaacgagttatgattttggaacatatggaatggagttttttcctgaggttccaatga |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| || |||||| |||||| |||||||||| |||||||||||||||||||| | | |
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| T |
17173722 |
atgttcaatggtgatgatggaatggcaagtggatctggtaccacaatgaattatgagtttggatcatatggaattgagttttttcctgaggttcctctta |
17173623 |
T |
|
| Q |
337 |
agcaggaaattgatttcatgggtatgatctatagaaatccttaag |
381 |
Q |
| |
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| || ||||||||| |||||| |||||| ||| ||| ||||||| |
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| T |
17173622 |
atcaagaaattgatctcatggagatgatcaataaaaacccttaag |
17173578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 21 - 268
Target Start/End: Original strand, 13643818 - 13644065
Alignment:
| Q |
21 |
aagagaaagaatcggagtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacga |
120 |
Q |
| |
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|||| ||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||| | ||| ||| ||| |||||||||| ||||||| | |
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| T |
13643818 |
aagaaaaagaatcgaggtaacagttcaaagggaacactgcttttgaaatacataatggaagtcacttgtgccaagaaagttgaaaaggagatgatgacta |
13643917 |
T |
|
| Q |
121 |
attctacgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgaggaaatgga |
220 |
Q |
| |
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||||| |||| ||||||| | |||||||| ||||| | |||||| || |||||||||||| ||||||||||||| || |||| | || ||||| | |
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| T |
13643918 |
attctctgagcatgatgaatatcgggaatcagccaaattatgaaagttctgagagtgattttttctctgaaggtttgactactccagaagatgaaattgg |
13644017 |
T |
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| Q |
221 |
tgggtatgctccaatgatgttcaatggtgatgatggaatggcaagtgg |
268 |
Q |
| |
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||| |||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
13644018 |
tggctatgtgccaatgatgttcaatgatgatgatggaatggcaagtgg |
13644065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 21 - 268
Target Start/End: Original strand, 13706267 - 13706514
Alignment:
| Q |
21 |
aagagaaagaatcggagtaacagttcaaagggaaaactactcttgaaatacataatggaagtcaatgatgctaaggaagctgaaaaggagctgatgacga |
120 |
Q |
| |
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|||| ||||||||| |||||||||||||||||| ||| || |||||||||||||||||||| | | ||| ||| ||| |||||||||| |||||| | |
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| T |
13706267 |
aagaaaaagaatcgaggtaacagttcaaagggaacactgcttttgaaatacataatggaagttacttctgccaagaaagttgaaaaggagatgatgaata |
13706366 |
T |
|
| Q |
121 |
attctacgagcgtgatgaaatttgggaatcacccaaactttgaaagctcggagagtgattttagctctgaaggtttggttaatccaaatgaggaaatgga |
220 |
Q |
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||||| ||||| ||||||| | |||||||| ||||| | |||||| || |||||||||||| ||||||||||||| || |||| | || | ||| | |
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| T |
13706367 |
attctccgagcatgatgaatatcgggaatcagccaaattatgaaagttctgagagtgattttttctctgaaggtttgactactccagaagatggaattgg |
13706466 |
T |
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| Q |
221 |
tgggtatgctccaatgatgttcaatggtgatgatggaatggcaagtgg |
268 |
Q |
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||| |||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
13706467 |
tggctatgtgccaatgatgttcaatgatgatgatggaatggcaagtgg |
13706514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 17173470 - 17173418
Alignment:
| Q |
491 |
agagttattttgttttgcttagtttccttgtggatgcaactaaggcttgttta |
543 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||| |||||| ||||||||| |
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|
| T |
17173470 |
agagttattttgttttgctaagttttcttgtggatggaactaatgcttgttta |
17173418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 382
Target Start/End: Original strand, 13644067 - 13644155
Alignment:
| Q |
294 |
tttggaacatatggaatggagttttttcctgaggttccaatgaagcaggaaattgatttcatgggtatgatctatagaaatccttaagg |
382 |
Q |
| |
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|||||| || |||||||||||||||||||||| |||| | |||||||||||||| |||||| | ||| |||||||| |||||||| |
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| T |
13644067 |
tttggatcaaatggaatggagttttttcctgaaattcctaaaaagcaggaaattgacctcatggagaagatatatagaaacccttaagg |
13644155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 13706526 - 13706571
Alignment:
| Q |
304 |
atggaatggagttttttcctgaggttccaatgaagcaggaaattga |
349 |
Q |
| |
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|||||||||||||||||||||| |||| || |||||||||||||| |
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| T |
13706526 |
atggaatggagttttttcctgaaattcctataaagcaggaaattga |
13706571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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