View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19822_low_11 (Length: 235)
Name: NF19822_low_11
Description: NF19822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19822_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 22883580 - 22883377
Alignment:
| Q |
17 |
tcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgctttcatcaataatatttggcggaaactgttcaagttg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22883580 |
tcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgctttcatcaataatatttggcgcaaactgttcaagttg |
22883481 |
T |
|
| Q |
117 |
agaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttagtgcaatacctagaatttgttcaccaccaaccttccc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22883480 |
agaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttagtgcaatacctagaatttgttcaccaccaaccttccc |
22883381 |
T |
|
| Q |
217 |
tttg |
220 |
Q |
| |
|
|||| |
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|
| T |
22883380 |
tttg |
22883377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 22901510 - 22901307
Alignment:
| Q |
17 |
tcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgctttcatcaataatatttggcggaaactgttcaagttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22901510 |
tcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgctttcatcaataatatttggcgcaaactgttcaagttg |
22901411 |
T |
|
| Q |
117 |
agaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttagtgcaatacctagaatttgttcaccaccaaccttccc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22901410 |
agaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttagtgcaatacctagaatttgttcaccaccaaccttccc |
22901311 |
T |
|
| Q |
217 |
tttg |
220 |
Q |
| |
|
|||| |
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|
| T |
22901310 |
tttg |
22901307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 22983235 - 22983438
Alignment:
| Q |
17 |
tcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgctttcatcaataatatttggcggaaactgttcaagttg |
116 |
Q |
| |
|
||||||||||| || | ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
22983235 |
tcacctttatttctccatcatggtaatgttacctggaagattagtctctgacatggatcatgctttcatcaatattatttggcgcaaactgttcaagttg |
22983334 |
T |
|
| Q |
117 |
agaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttagtgcaatacctagaatttgttcaccaccaaccttccc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22983335 |
agaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttagtgcaatacctagaatttgttcaccaccaaccttccc |
22983434 |
T |
|
| Q |
217 |
tttg |
220 |
Q |
| |
|
|||| |
|
|
| T |
22983435 |
tttg |
22983438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 23805173 - 23804970
Alignment:
| Q |
17 |
tcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgctttcatcaataatatttggcggaaactgttcaagttg |
116 |
Q |
| |
|
||||||||||| || | ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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|
| T |
23805173 |
tcacctttatttctccatcatggtaatgttacctggaagattagtctctgacatggatcatgctttcatcaatagtatttggcgcaaactgttcaagttg |
23805074 |
T |
|
| Q |
117 |
agaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttagtgcaatacctagaatttgttcaccaccaaccttccc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23805073 |
agaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttctttagtgcaatacctagaatttgttcaccaccaaccttccc |
23804974 |
T |
|
| Q |
217 |
tttg |
220 |
Q |
| |
|
|||| |
|
|
| T |
23804973 |
tttg |
23804970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 22916453 - 22916246
Alignment:
| Q |
17 |
tcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgctttcatcaataatatttggcggaaactgttcaagttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
22916453 |
tcacctttattccttcctcatggtaatgttacctagaagactagtctctgacatggatcatgctttcatcaataatatttggcgcaaactgttcaagttg |
22916354 |
T |
|
| Q |
117 |
agaatgagtactttctaccatcctaaaatggatggacaaaatgaagtcttgaatctttc----tttagtgcaatacctagaatttgttcaccaccaacct |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
22916353 |
agaatgagcactttctaccatcctaaaatagatggataaaatgaagtcttgaatctttctatatatagtgcaatacctagaatttgttcaccaccaacct |
22916254 |
T |
|
| Q |
213 |
tccctttg |
220 |
Q |
| |
|
|||||||| |
|
|
| T |
22916253 |
tccctttg |
22916246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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