View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19822_low_12 (Length: 221)

Name: NF19822_low_12
Description: NF19822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19822_low_12
NF19822_low_12
[»] chr1 (19 HSPs)
chr1 (1-185)||(8939589-8939773)
chr1 (1-207)||(8927163-8927369)
chr1 (4-185)||(8962519-8962700)
chr1 (25-190)||(9364633-9364798)
chr1 (25-190)||(9337774-9337939)
chr1 (1-180)||(9300306-9300485)
chr1 (1-191)||(9466439-9466629)
chr1 (4-191)||(9242245-9242432)
chr1 (4-182)||(9257219-9257401)
chr1 (10-185)||(9377939-9378114)
chr1 (25-185)||(9236119-9236279)
chr1 (34-180)||(9069627-9069773)
chr1 (60-180)||(8861517-8861637)
chr1 (64-181)||(9437484-9437601)
chr1 (76-180)||(9125095-9125199)
chr1 (58-180)||(9085923-9086045)
chr1 (65-181)||(9420401-9420517)
chr1 (125-179)||(52174469-52174523)
chr1 (76-181)||(8978916-8979021)
[»] chr3 (1 HSPs)
chr3 (1-191)||(9171715-9171905)
[»] scaffold0690 (2 HSPs)
scaffold0690 (4-204)||(1821-2021)
scaffold0690 (145-190)||(4961-5006)
[»] chr6 (1 HSPs)
chr6 (4-204)||(15910085-15910285)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 8939589 - 8939773
Alignment:
Q  1 ttcggtttagctaagctgtgctccaaaaatcaaagtatagtatcgatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaa 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8939589 ttcggtttagctaagctgtgctccaaaaatcaaagtacagtatcaatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaa 8939688  T
Q  101 actttgggaatgtctcttagaaggctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaaagaatactaa 185  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||    
T  8939689 actttgggaatgtctcttataagtctgatatatacagctacggtatgttgctgctggagatggttggaggaagaaagaatactaa 8939773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 8927163 - 8927369
Alignment:
Q  1 ttcggtttagctaagctgtgctccaaaaatcaaagtatagtatcgatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaa 100  Q
    ||||||||||| ||||||||||| |||||||| || |  ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  8927163 ttcggtttagcgaagctgtgctctaaaaatcatagcactgtatcgatgactgcagccaggggaacattaggttacatggcacctgaagttttttctcgaa 8927262  T
Q  101 actttgggaatgtctcttagaaggctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaaagaatactaaaacaactactggtgg 200  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  8927263 actttgggaatgtctcttataagtctgatatatacagctacggtatgttgttgctagagatggttggaggaagaaagaatactaaaacaactactggtgg 8927362  T
Q  201 tgaagaa 207  Q
     ||||||    
T  8927363 cgaagaa 8927369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 8962519 - 8962700
Alignment:
Q  4 ggtttagctaagctgtgctccaaaaatcaaagtatagtatcgatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaaact 103  Q
    |||||||| ||| |||||||||||||||||| ||| ||||||||||| || || |||||||| ||||| ||||||||||||||||| |||||||||||||    
T  8962519 ggtttagccaagttgtgctccaaaaatcaaactattgtatcgatgactgcggctaggggaacattaggatacatggcacctgaagtattttctcgaaact 8962618  T
Q  104 ttgggaatgtctcttagaaggctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaaagaatactaa 185  Q
    |||||||||||||||| ||  |||||||||||||||| || |||||| ||||||| ||||| ||||||||||||||||||||    
T  8962619 ttgggaatgtctcttataaatctgatatatacagctatggaatgttgctgctggagatggtcggaggaagaaagaatactaa 8962700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 9364633 - 9364798
Alignment:
Q  25 aaaaatcaaagtatagtatcgatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaaactttgggaatgtctcttagaagg 124  Q
    |||||||||||||| ||||| ||||| ||||| | |||||| ||||| |||||||||||||||||||||||  |||||||||| ||||||||||| |||     
T  9364633 aaaaatcaaagtatcgtatccatgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagt 9364732  T
Q  125 ctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaaagaatactaaaacaa 190  Q
    ||||||||||||| ||||| ||||| ||| |||||||||||||||||||||||||||| |||||||    
T  9364733 ctgatatatacagttacggtatgttattgttggaaatggttggaggaagaaagaatacaaaaacaa 9364798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 9337774 - 9337939
Alignment:
Q  25 aaaaatcaaagtatagtatcgatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaaactttgggaatgtctcttagaagg 124  Q
    |||||||||||| | ||||| ||||| ||||| | |||||| ||||| |||||||||||||||||||||||  |||||||||| ||||||||||| |||     
T  9337774 aaaaatcaaagtgtcgtatccatgactgcagctaagggaacattaggctacatggcacctgaagttttttcaagaaactttggtaatgtctcttataagt 9337873  T
Q  125 ctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaaagaatactaaaacaa 190  Q
    ||||||||||||| ||||| ||||| ||| |||||||||||||||||||||||||||| |||||||    
T  9337874 ctgatatatacagttacggtatgttattgttggaaatggttggaggaagaaagaatacaaaaacaa 9337939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 9300306 - 9300485
Alignment:
Q  1 ttcggtttagctaagctgtgctccaaaaatcaaagtatagtatcgatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaa 100  Q
    |||||||| |||||| ||||||| |||||||||||||   |||| |||||||| ||||  ||||| ||||| ||||||||||| |||||||||||| |||    
T  9300306 ttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggccaaaggaacattaggatacatggcacccgaagttttttctagaa 9300405  T
Q  101 actttgggaatgtctcttagaaggctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaaagaat 180  Q
    ||||||||||||||||||| ||| | |||||||| || || ||||||||||||||||| |||||||| ||||| ||||||    
T  9300406 actttgggaatgtctcttataagtccgatatatatagttatggcatgttgttgctggagatggttgggggaaggaagaat 9300485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 9466629 - 9466439
Alignment:
Q  1 ttcggtttagctaagctgtgctccaaaaatcaaagtatagtatcgatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaa 100  Q
    |||||||| |||||| ||||||| ||||||| ||||| ||| || |||||||||||||  ||||| ||||| ||||||||||| |||||||||||| |||    
T  9466629 ttcggtttggctaagatgtgctcgaaaaatcgaagtacagtgtctatgaccgcagccaaaggaacgttaggctacatggcacccgaagttttttctagaa 9466530  T
Q  101 actttgggaatgtctcttagaaggctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaaagaatactaaaacaac 191  Q
    |||| ||||||||||| || ||| |||||||||| || || || ||||||||| |||| ||||||| ||||||||||||||| || |||||    
T  9466529 acttcgggaatgtctcatataagtctgatatatatagttatggtatgttgttgttggagatggttgcaggaagaaagaatacaaacacaac 9466439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 9242432 - 9242245
Alignment:
Q  4 ggtttagctaagctgtgctccaaaaatcaaagtatagtatcgatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaaact 103  Q
    ||||| || ||| |||| || |||||||||||||| ||||| ||||| || || | ||||||  |||| |||||||||||||||||||||||| |||| |    
T  9242432 ggtttggccaagatgtgttcgaaaaatcaaagtattgtatccatgactgcggctaagggaacagtaggctacatggcacctgaagttttttctagaaatt 9242333  T
Q  104 ttgggaatgtctcttagaaggctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaaagaatactaaaacaac 191  Q
    |||| ||||||||||| ||| | ||| ||||||| ||||| ||||| ||| |||| ||||||||||||||||||||||| ||||||||    
T  9242332 ttggaaatgtctcttataagtccgatgtatacagttacggtatgttattgttggagatggttggaggaagaaagaatacaaaaacaac 9242245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 182
Target Start/End: Complemental strand, 9257401 - 9257219
Alignment:
Q  4 ggtttagctaagctgtgctccaaaaatcaaagtatagtatcgatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaaact 103  Q
    ||||| |||||| ||||||| |||||||||||||   |||| ||||| ||||| || ||||| ||||| ||||||||||| |||||||||||| ||||||    
T  9257401 ggtttggctaagatgtgctcaaaaaatcaaagtactatatctatgactgcagcgagaggaacattaggatacatggcacccgaagttttttctagaaact 9257302  T
Q  104 ttgggaatgtctcttag----aaggctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaaagaatac 182  Q
    |||| |||||||||||     ||| |||||||||| ||||| || || ||| |  ||||||| ||||||||||||||||||||    
T  9257301 ttggtaatgtctcttaattataagtctgatatatatagctatggtatattgctattggaaattgttggaggaagaaagaatac 9257219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 10 - 185
Target Start/End: Original strand, 9377939 - 9378114
Alignment:
Q  10 gctaagctgtgctccaaaaatcaaagtatagtatcgatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaaactttggga 109  Q
    ||||| |||||  |||||||||||||||  || || || |||||||| || ||||| || || ||||| |||||||||||||| ||  ||||||| || |    
T  9377939 gctaaactgtgtcccaaaaatcaaagtacggtgtctataaccgcagctagaggaacattgggctacattgcacctgaagttttctcaagaaacttcggaa 9378038  T
Q  110 atgtctcttagaaggctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaaagaatactaa 185  Q
    |||| ||||| ||| ||||||| || |||||||| || |||||||| || ||||||||||| ||||||||||||||    
T  9378039 atgtttcttacaagtctgatatttatagctacggaatattgttgctagagatggttggaggtagaaagaatactaa 9378114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 9236279 - 9236119
Alignment:
Q  25 aaaaatcaaagtatagtatcgatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaaactttgggaatgtctcttagaagg 124  Q
    ||||| ||||| | ||| || ||||| ||||| || ||||| || || ||||| |||||||||||||| ||  ||||||| || ||||| ||||| |||     
T  9236279 aaaaaccaaagcacagtgtctatgactgcagcgagaggaaccttgggatacattgcacctgaagttttctcgagaaacttcggaaatgtttcttataagt 9236180  T
Q  125 ctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaaagaatactaa 185  Q
    ||||||| || |||||||| ||||||||||| || |||||||| |||||||||||||||||    
T  9236179 ctgatatttatagctacggtatgttgttgcttgagatggttggtggaagaaagaatactaa 9236119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 180
Target Start/End: Complemental strand, 9069773 - 9069627
Alignment:
Q  34 agtatagtatcgatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaaactttgggaatgtctcttagaaggctgatatat 133  Q
    |||||||| || ||||| || || |||||||| || || || |||||||| |||||  | |||||||| ||||| ||||| |||   ||| |||||||||    
T  9069773 agtatagtgtccatgacagctgctaggggaaccttgggatatatggcacccgaagtagtgtctcgaaattttggaaatgtttctcttaagtctgatatat 9069674  T
Q  134 acagctacggcatgttgttgctggaaatggttggaggaagaaagaat 180  Q
    |||| || || ||||||||||| ||||||||||||||||||||||||    
T  9069673 acagttatggaatgttgttgctagaaatggttggaggaagaaagaat 9069627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 8861637 - 8861517
Alignment:
Q  60 gggaactttagggtacatggcacctgaagttttttctcgaaactttgggaatgtctcttagaaggctgatatatacagctacggcatgttgttgctggaa 159  Q
    |||||| || || |||||||| ||||||||| | ||  |||| ||||||||||| |||   ||| | ||||| ||||| ||||| ||||||||||| |||    
T  8861637 gggaaccttgggatacatggcgcctgaagttctatcaagaaattttgggaatgtgtctcttaagtcagatatttacagttacggaatgttgttgctagaa 8861538  T
Q  160 atggttggaggaagaaagaat 180  Q
    ||||||||||| |||||||||    
T  8861537 atggttggagggagaaagaat 8861517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 9437601 - 9437484
Alignment:
Q  64 actttagggtacatggcacctgaagttttttctcgaaactttgggaatgtctcttagaaggctgatatatacagctacggcatgttgttgctggaaatgg 163  Q
    |||||||| ||||| ||||||||||| |||||  | |||||||| ||||| || || || ||||| ||||| || || || |||||  |||| |||||||    
T  9437601 actttaggttacattgcacctgaagtgttttcgaggaactttggaaatgtatcgtataaagctgacatatatagttatgggatgttactgcttgaaatgg 9437502  T
Q  164 ttggaggaagaaagaata 181  Q
    ||||||||||||| ||||    
T  9437501 ttggaggaagaaaaaata 9437484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 9125199 - 9125095
Alignment:
Q  76 atggcacctgaagttttttctcgaaactttgggaatgtctcttagaaggctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaa 175  Q
    ||||||||||||||||| || ||||| ||||| ||||| |||   ||| ||||||| || || || || ||||||||||||||| ||||||||||| | |    
T  9125199 atggcacctgaagttttgtcacgaaattttggaaatgtttctcgtaagtctgatatttatagttatgggatgttgttgctggaattggttggaggacgca 9125100  T
Q  176 agaat 180  Q
    |||||    
T  9125099 agaat 9125095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 180
Target Start/End: Complemental strand, 9086045 - 9085923
Alignment:
Q  58 aggggaactttagggtacatggcacctgaagttttttctcgaaactttgggaatgtctcttagaaggctgatatatacagctacggcatgttgttgctgg 157  Q
    |||||||| || || || ||||| ||||||||||| || ||||| ||||||||||| |||   ||| ||||||| || || || || ||||||||||| |    
T  9086045 aggggaaccttgggatatatggcgcctgaagttttgtcacgaaattttgggaatgtttctcttaagtctgatatttatagttatgggatgttgttgctag 9085946  T
Q  158 aaatggttggaggaagaaagaat 180  Q
    | |||||||| ||||| ||||||    
T  9085945 agatggttggtggaaggaagaat 9085923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 181
Target Start/End: Complemental strand, 9420517 - 9420401
Alignment:
Q  65 ctttagggtacatggcacctgaagttttttctcgaaactttgggaatgtctcttagaaggctgatatatacagctacggcatgttgttgctggaaatggt 164  Q
    ||||||| ||||| ||||||||||| |||||  | |||||||| ||||| || || || ||||| ||||| || || || |||||  | || ||||||||    
T  9420517 ctttaggttacattgcacctgaagtgttttcgaggaactttggaaatgtatcgtataaagctgacatatatagttatgggatgttacttcttgaaatggt 9420418  T
Q  165 tggaggaagaaagaata 181  Q
    |||||||||||| ||||    
T  9420417 tggaggaagaaaaaata 9420401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 52174469 - 52174523
Alignment:
Q  125 ctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaaagaa 179  Q
    ||||||||||||| || ||||||||| | || |||||| ||||||||||||||||    
T  52174469 ctgatatatacagttatggcatgttgattcttgaaatgattggaggaagaaagaa 52174523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 8979021 - 8978916
Alignment:
Q  76 atggcacctgaagttttttctcgaaactttgggaatgtctcttagaaggctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaa 175  Q
    ||||||||||||||| | ||  |||| ||||| ||||| |||   ||  ||||||| || ||||| || ||||||||||| |||||||||| |||||| |    
T  8979021 atggcacctgaagttctgtcaagaaattttggtaatgtgtctcttaaatctgatatttatagctatggaatgttgttgctagaaatggttgcaggaagga 8978922  T
Q  176 agaata 181  Q
    ||||||    
T  8978921 agaata 8978916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 9171715 - 9171905
Alignment:
Q  1 ttcggtttagctaagctgtgctccaaaaatcaaagtatagtatcgatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaa 100  Q
    |||||||| |||||| ||||||| |||||||||||||   |||| ||||| |||||||| ||||| ||||| ||||||||||| |||||||||||| |||    
T  9171715 ttcggtttggctaagttgtgctcaaaaaatcaaagtactatatcaatgactgcagccagaggaacattaggatacatggcacccgaagttttttctagaa 9171814  T
Q  101 actttgggaatgtctcttagaaggctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaaagaatactaaaacaac 191  Q
    | ||||||||||||||||| ||| |||||||||| ||||| || |||||| |  ||||||| |||||||||||||||||||| || |||||    
T  9171815 attttgggaatgtctcttataagtctgatatatatagctatggtatgttgctattggaaattgttggaggaagaaagaatacaaacacaac 9171905  T

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Target: scaffold0690 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 1821 - 2021
Alignment:
Q  4 ggtttagctaagctgtgctccaaaaatcaaagtatagtatcgatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaaact 103  Q
    ||||| |||||| |||| || |||||||||||||  ||||| |||||  |||| | |||||| ||||| |||||||||||||||||||||||| |||| |    
T  1821 ggtttggctaagatgtgttcgaaaaatcaaagtaatgtatccatgactacagctaagggaacattaggctacatggcacctgaagttttttctagaaatt 1920  T
Q  104 ttgggaatgtctcttagaaggctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaaagaatactaaaacaactactggtggtga 203  Q
    |||| ||||||||||| ||| | ||||||||||| ||||| ||||| ||| |||| ||||||||||||||||||||||| |||||||| | ||||| |||    
T  1921 ttggaaatgtctcttataagtccgatatatacagttacggtatgttattgttggagatggttggaggaagaaagaatacgaaaacaacaagtggtgatga 2020  T
Q  204 a 204  Q
    |    
T  2021 a 2021  T

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Target: scaffold0690; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 4961 - 5006
Alignment:
Q  145 atgttgttgctggaaatggttggaggaagaaagaatactaaaacaa 190  Q
    ||||| |||||||| ||||||||||||||||||||||| |||||||    
T  4961 atgttattgctggagatggttggaggaagaaagaatacaaaaacaa 5006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 15910285 - 15910085
Alignment:
Q  4 ggtttagctaagctgtgctccaaaaatcaaagtatagtatcgatgaccgcagccaggggaactttagggtacatggcacctgaagttttttctcgaaact 103  Q
    ||||| |||||| |||| || |||||||||||||  ||||| ||||| | ||| | |||||| ||||| |||||||||||||||||||||||| |||| |    
T  15910285 ggtttggctaagatgtgttcgaaaaatcaaagtaatgtatccatgactgtagctaagggaacattaggctacatggcacctgaagttttttctagaaatt 15910186  T
Q  104 ttgggaatgtctcttagaaggctgatatatacagctacggcatgttgttgctggaaatggttggaggaagaaagaatactaaaacaactactggtggtga 203  Q
    |||| ||||||||||| ||| | ||||||||||| ||||| ||||| ||| |||| ||||||||||||||||||||||| |||||||| | ||||| |||    
T  15910185 ttggaaatgtctcttataagtccgatatatacagttacggtatgttattgttggagatggttggaggaagaaagaatacaaaaacaacaagtggtgatga 15910086  T
Q  204 a 204  Q
    |    
T  15910085 a 15910085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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