View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19822_low_2 (Length: 488)
Name: NF19822_low_2
Description: NF19822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19822_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 198 - 357
Target Start/End: Complemental strand, 2623252 - 2623093
Alignment:
| Q |
198 |
aagggttaaggttcttctagaaatgccaagcacaaggactattgcagcgactgtgttcttaacatcagaatttatagaggaatctaagtatataatgaag |
297 |
Q |
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| T |
2623252 |
aagggttaaggttcttctagaaatgccaagcacaaggactacttcagcgactgtgttcttaacatcagaatttatagaggaatctaagtatataatgaag |
2623153 |
T |
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| Q |
298 |
tgcgcaaaaattagacacggtaaaatttcacatgaggtagcatgttgttggtcccctatt |
357 |
Q |
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| T |
2623152 |
tgcgcaaaaattagacacggtaaaatttcacatgaggtagcatgttgttggtcccctatt |
2623093 |
T |
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Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 2623096 - 2623009
Alignment:
| Q |
386 |
tattataggttggacactggaatttggcttttcattgtctccagattcccctctgcctctctgaatatctatcacgtgtggtgtgatc |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2623096 |
tattataggttggacactggaatttggcttttcattgtctccagattcccctctgactctctgaatatctatcacgtgtggtgtgatc |
2623009 |
T |
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