View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19822_low_3 (Length: 485)

Name: NF19822_low_3
Description: NF19822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19822_low_3
NF19822_low_3
[»] chr5 (3 HSPs)
chr5 (154-461)||(17586890-17587198)
chr5 (36-112)||(17588119-17588195)
chr5 (108-137)||(17587199-17587228)
[»] chr7 (7 HSPs)
chr7 (146-461)||(14739005-14739322)
chr7 (30-141)||(14738480-14738591)
chr7 (30-160)||(19780690-19780820)
chr7 (30-223)||(19723523-19723704)
chr7 (70-268)||(19886367-19886565)
chr7 (166-258)||(19781180-19781275)
chr7 (294-350)||(19886260-19886316)
[»] chr3 (3 HSPs)
chr3 (30-223)||(32577580-32577773)
chr3 (164-223)||(12733565-12733624)
chr3 (296-334)||(12733436-12733474)
[»] chr6 (1 HSPs)
chr6 (294-350)||(14750722-14750778)
[»] chr2 (2 HSPs)
chr2 (130-230)||(18912342-18912442)
chr2 (294-350)||(18912206-18912262)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 154 - 461
Target Start/End: Complemental strand, 17587198 - 17586890
Alignment:
Q  154 atcataacaattgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattattcttttcaaaaaagaatgttgctccactttt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  17587198 atcataacaattgtgtcacttatggtactagcttttaggcatcaagtttcaagctaatttctttattactcttttcaaaaaagaatgttgctgcactttt 17587099  T
Q  254 gagaaatatgcattctttgcaattttgttctacattctcttgtgtaatatgggtctttcttgaatcataagatcacaacctcaactgtaagcacatccag 353  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17587098 gagaaatatgcattctttgcatttttcttctacattctcttgtgtaatatgggtctttcttgaatcataagatcacaacctcaactgtaagcacatccag 17586999  T
Q  354 caataagaaagggagaaacagtgacactacttgtctccaaattaacttgtttctacatataaaagtac-nnnnnnnnnngtgaaggaacaaaaacaacac 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||    
T  17586998 caataagaaagggagaaacagtgacactacttgtctccaaattaacttgtttctacatataaaagtacaaaaaaaaaaagtgaaggaacaaaaacaacac 17586899  T
Q  453 aatctaaac 461  Q
    |||||||||    
T  17586898 aatctaaac 17586890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 17588195 - 17588119
Alignment:
Q  36 ttctttttggtttagttttgtttataccaattcaagtatatcagaactaagtttggaaacaatgactatttcatttt 112  Q
    ||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  17588195 ttctttttggttttgttttgtttataccaatttaagtatatgagaactaagtttggaaacaatgactatttcatttt 17588119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 17587228 - 17587199
Alignment:
Q  108 atttttgtacttgttaatgaagttgtagta 137  Q
    ||||||||||||||||||||||||||||||    
T  17587228 atttttgtacttgttaatgaagttgtagta 17587199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 146 - 461
Target Start/End: Original strand, 14739005 - 14739322
Alignment:
Q  146 tttttaatatcataacaattgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattattcttttcaaaaaagaatgttgct 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14739005 tttttaatatcataacaattgtgtcacttatggtactagcttttaggcataaagtttcaagctaatttctttattattcttttcaaaaaagaatgttgct 14739104  T
Q  246 ccacttttgagaaatatgcattctttgcaattttgttctacattctcttgtgtaatatgggtctttcttgaatcataagatcacaacctcaactgtaagc 345  Q
     |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  14739105 gcacttttgagaaatatgcattctttgcattttttttctacattctcttgtgtaatatgggtctttcttgaatcataagatcacaacctcaactataaac 14739204  T
Q  346 acatccagcaataagaaagggagaaacagtgacactacttgtctccaaattaacttgtttctacatataaaagtac--nnnnnnnnnngtgaaggaacaa 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||    
T  14739205 acatccagcaataagaaagggagaaacagtgacactacttgtctccaaattaacttgtttctacatataaaagtacaaaaaaaaaaaagtgaaggaacaa 14739304  T
Q  444 aaacaacacaatctaaac 461  Q
    ||||||||||||||||||    
T  14739305 aaacaacacaatctaaac 14739322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 14738480 - 14738591
Alignment:
Q  30 ttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaagtttggaaacaatgactatttcatttttgtacttgttaatgaag 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14738480 ttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaggtttggaaacaatgactatttcatttttgtacttgttaatgaag 14738579  T
Q  130 ttgtagtagaat 141  Q
    ||||||||||||    
T  14738580 ttgtagtagaat 14738591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 19780690 - 19780820
Alignment:
Q  30 ttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaagtttggaaacaatgactatttcatttttgtacttgttaatgaag 129  Q
    ||||||||||| ||||||||||||||||||||| | ||||||| ||||  |||||| |||||||||||||  |||| |||||||||||||| ||||||      
T  19780690 ttgatattcttcttggtttagttttgtttatactagttcaagtttatccaaactaattttggaaacaatggttattacatttttgtacttgataatgata 19780789  T
Q  130 ttgtagtagaatctaatttttaatatcataa 160  Q
    |||||||| |||||| |||||||||||||||    
T  19780790 ttgtagtataatctattttttaatatcataa 19780820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 19723523 - 19723704
Alignment:
Q  30 ttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaagtttggaaacaatgactatttcatttttgtacttgttaatgaag 129  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||   ||||||          ||| | ||||| ||||| || || | ||||||      
T  19723523 ttgatattcttcttggtttagttttgtttataccagttcaagtatattcaaactaat---------aattattattttattttggttctagataatgata 19723613  T
Q  130 ttgtagtagaatctaatttttaatatcataacaattgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattatt 223  Q
    |||||||| |||||||||||||   ||| |||  | ||||||||||| || |||| ||||||||||||||||| |||||||| |||||||||||    
T  19723614 ttgtagtaaaatctaattttta---tcacaaccgtcgtgtcacttattgtgctagattttaggcatcaaggttgaagctaatctctttattatt 19723704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 268
Target Start/End: Complemental strand, 19886565 - 19886367
Alignment:
Q  70 agtatatcagaactaagtttggaaacaatgactatttcatttttgtacttgttaatgaagttgtagtagaatctaatttttaatatcataacaattgtgt 169  Q
    ||||||||  |||||| |||| | || |||| | ||| ||||||||||||| ||||||  |||||||  ||||||  |||| ||||||||||  |  |||    
T  19886565 agtatatccaaactaattttgaacacgatgatttttttatttttgtacttgataatgatattgtagtcaaatctacctttttatatcataactgtcttgt 19886466  T
Q  170 cacttatggtactagcttttaggcatcaaggttcaagctaatttctttattattcttttcaaaaaagaatgttgctccacttttgagaaatatgcattc 268  Q
    ||| | ||||| | |||||||||||||||  || ||||| |||||| | ||||| |||||| ||  |||||| ||| |||||||||| | |||||||||    
T  19886465 cacctgtggtattggcttttaggcatcaaacttgaagctgatttctctcttatttttttcacaatggaatgtggcttcacttttgaggattatgcattc 19886367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 258
Target Start/End: Original strand, 19781180 - 19781275
Alignment:
Q  166 gtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttct---ttattattcttttcaaaaaagaatgttgctccacttttgagaa 258  Q
    |||||| |||||||||||| ||||||| |||| |||| ||||||||||||   |||||||| |||||| ||| |||||| ||| ||||||||||||    
T  19781180 gtgtcagttatggtactagtttttaggaatcacggttgaagctaatttctttattattatttttttcagaaaggaatgtggcttcacttttgagaa 19781275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 19886316 - 19886260
Alignment:
Q  294 tgtgtaatatgggtctttcttgaatcataagatcacaacctcaactgtaagcacatc 350  Q
    ||||||||| ||||||||||||||||| | || |||||||||||||  |||||||||    
T  19886316 tgtgtaatacgggtctttcttgaatcacaggaccacaacctcaacttcaagcacatc 19886260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 32577773 - 32577580
Alignment:
Q  30 ttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaagtttggaaacaatgactatttcatttttgtacttgttaatgaag 129  Q
    ||||||||||| ||||||||||||||||||||| | ||||||| ||||  |||||| |||||| ||||||  |||| |||||||||||||| ||||||      
T  32577773 ttgatattcttcttggtttagttttgtttatactagttcaagtttatccaaactaactttggagacaatggttattacatttttgtacttgataatgata 32577674  T
Q  130 ttgtagtagaatctaatttttaatatcataacaattgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattatt 223  Q
    |||||||| |||||| |||||||||||||||   |||||||| ||||||||||||| |||||| |||| ||||  |||||||||||||||||||    
T  32577673 ttgtagtataatctattttttaatatcataagcgttgtgtcagttatggtactagcatttaggaatcatggttggagctaatttctttattatt 32577580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 12733624 - 12733565
Alignment:
Q  164 ttgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattatt 223  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  12733624 ttgtgtcacttatggtactagcttttaggcatcaaggttgaagctaatttgtttattatt 12733565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 12733474 - 12733436
Alignment:
Q  296 tgtaatatgggtctttcttgaatcataagatcacaacct 334  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  12733474 tgtaataggggtctttcttgaatcataggatcacaacct 12733436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 294 - 350
Target Start/End: Original strand, 14750722 - 14750778
Alignment:
Q  294 tgtgtaatatgggtctttcttgaatcataagatcacaacctcaactgtaagcacatc 350  Q
    ||||||||||||||||||||||||||||| || |||||||||||||  |||||||||    
T  14750722 tgtgtaatatgggtctttcttgaatcataggaccacaacctcaacttcaagcacatc 14750778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 18912442 - 18912342
Alignment:
Q  130 ttgtagtagaatctaatttttaatatcataacaattgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattattcttttc 229  Q
    ||||||||||||||||  | ||||||||||||  | ||||||| | ||| | | ||||||||||||| ||||| |||||||||||| ||||||| |||||    
T  18912442 ttgtagtagaatctaaactataatatcataaccgtggtgtcacctgtggcattggcttttaggcatcgaggttgaagctaatttctctattattattttc 18912343  T
Q  230 a 230  Q
    |    
T  18912342 a 18912342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 350
Target Start/End: Complemental strand, 18912262 - 18912206
Alignment:
Q  294 tgtgtaatatgggtctttcttgaatcataagatcacaacctcaactgtaagcacatc 350  Q
    |||| ||||||| |||||||||||||||| || |||||||||||||  |||||||||    
T  18912262 tgtgcaatatggctctttcttgaatcataggaccacaacctcaacttcaagcacatc 18912206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University