View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19822_low_4 (Length: 440)

Name: NF19822_low_4
Description: NF19822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19822_low_4
NF19822_low_4
[»] chr6 (7 HSPs)
chr6 (7-344)||(34260115-34260452)
chr6 (13-343)||(34261925-34262254)
chr6 (238-344)||(6829952-6830058)
chr6 (238-343)||(6826558-6826663)
chr6 (13-95)||(6829744-6829826)
chr6 (278-343)||(18066292-18066356)
chr6 (362-392)||(27096011-27096041)
[»] chr7 (12 HSPs)
chr7 (238-343)||(5956439-5956544)
chr7 (238-343)||(43844794-43844899)
chr7 (200-344)||(5960918-5961062)
chr7 (211-338)||(4126698-4126825)
chr7 (211-336)||(43845824-43845949)
chr7 (13-95)||(5956670-5956752)
chr7 (243-320)||(39020956-39021034)
chr7 (343-392)||(676041-676090)
chr7 (245-343)||(35752326-35752423)
chr7 (298-343)||(32249345-32249390)
chr7 (245-343)||(35753035-35753137)
chr7 (332-376)||(48831200-48831244)
[»] chr1 (8 HSPs)
chr1 (245-344)||(7338769-7338868)
chr1 (238-343)||(2367506-2367611)
chr1 (264-351)||(7338001-7338088)
chr1 (13-95)||(2367298-2367380)
chr1 (299-345)||(49400311-49400357)
chr1 (275-344)||(27890567-27890636)
chr1 (299-340)||(49399549-49399590)
chr1 (299-343)||(27891311-27891355)
[»] chr4 (18 HSPs)
chr4 (269-344)||(36386029-36386104)
chr4 (269-344)||(36385812-36385887)
chr4 (13-95)||(36385567-36385649)
chr4 (264-343)||(39311361-39311440)
chr4 (19-67)||(39311122-39311170)
chr4 (264-343)||(32159511-32159590)
chr4 (264-343)||(39310396-39310475)
chr4 (269-344)||(52238304-52238379)
chr4 (264-342)||(24484784-24484862)
chr4 (269-338)||(21857532-21857601)
chr4 (269-338)||(21913395-21913464)
chr4 (19-67)||(24485509-24485557)
chr4 (299-343)||(52237635-52237679)
chr4 (269-338)||(3464916-3464985)
chr4 (296-337)||(14087662-14087703)
chr4 (278-343)||(55633554-55633619)
chr4 (275-343)||(31414848-31414916)
chr4 (334-390)||(56453830-56453886)
[»] scaffold0402 (2 HSPs)
scaffold0402 (238-343)||(10856-10961)
scaffold0402 (13-93)||(11096-11176)
[»] chr8 (22 HSPs)
chr8 (238-334)||(17942977-17943073)
chr8 (13-71)||(42503672-42503730)
chr8 (243-347)||(17938171-17938275)
chr8 (13-93)||(17942765-17942845)
chr8 (245-340)||(42503029-42503124)
chr8 (245-344)||(42578708-42578807)
chr8 (245-343)||(7870343-7870441)
chr8 (245-343)||(42503892-42503990)
chr8 (281-338)||(8814483-8814540)
chr8 (245-344)||(38443694-38443793)
chr8 (245-315)||(11520061-11520131)
chr8 (245-343)||(12203313-12203411)
chr8 (245-343)||(12447741-12447839)
chr8 (275-344)||(6462616-6462685)
chr8 (269-344)||(11519349-11519424)
chr8 (245-336)||(38444435-38444526)
chr8 (13-59)||(38443917-38443963)
chr8 (291-344)||(12202689-12202742)
chr8 (291-344)||(12447117-12447170)
chr8 (13-61)||(12202836-12202884)
chr8 (13-61)||(12447264-12447312)
chr8 (246-343)||(6461880-6461977)
[»] chr2 (13 HSPs)
chr2 (245-343)||(35029831-35029930)
chr2 (264-343)||(34229064-34229143)
chr2 (269-343)||(34228147-34228221)
chr2 (245-337)||(39062225-39062317)
chr2 (245-319)||(1233724-1233798)
chr2 (243-320)||(29762228-29762305)
chr2 (31-68)||(34228833-34228870)
chr2 (307-344)||(20267164-20267201)
chr2 (307-344)||(33361046-33361083)
chr2 (299-343)||(6205448-6205492)
chr2 (307-343)||(20269022-20269058)
chr2 (275-343)||(39062900-39062968)
chr2 (295-343)||(42148680-42148728)
[»] chr5 (4 HSPs)
chr5 (245-343)||(120073-120171)
chr5 (332-392)||(35650325-35650385)
chr5 (276-338)||(2639717-2639779)
chr5 (269-338)||(40720332-40720401)
[»] chr3 (15 HSPs)
chr3 (13-71)||(29643050-29643108)
chr3 (343-392)||(28229421-28229470)
chr3 (275-344)||(23514486-23514555)
chr3 (244-342)||(35903690-35903790)
chr3 (279-338)||(40810290-40810349)
chr3 (245-343)||(44312339-44312437)
chr3 (346-392)||(48950617-48950663)
chr3 (346-392)||(33338193-33338239)
chr3 (279-337)||(40809585-40809643)
chr3 (309-343)||(44320810-44320844)
chr3 (275-340)||(1772870-1772935)
chr3 (278-343)||(16436524-16436589)
chr3 (299-344)||(23513687-23513732)
chr3 (245-342)||(29642400-29642497)
chr3 (275-343)||(8923627-8923695)
[»] scaffold0098 (1 HSPs)
scaffold0098 (245-343)||(52264-52362)
[»] scaffold0291 (1 HSPs)
scaffold0291 (275-343)||(19375-19444)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 34260452 - 34260115
Alignment:
Q  7 gtgagaagaaaagtttgactgaggatgatttaggggaggtgatgtggagcagaaggggaagagtgcgccataaaaggaagggagaggtgaggcggcaacg 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34260452 gtgaaaagaaaagtttgactgaggatgatttaggggaggtgatgtggagcagaaggggaagagtgcgccataaaaggaagggagaggtgaggcggcaatg 34260353  T
Q  107 gcagcggcggtnnnnnnnnnnnnnnnagatgtgctatctgagaaggacgaaggagagtttgaacgcgcgttggcatttgtatcattacagaaagcgcgta 206  Q
    |||||||||||               ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  34260352 gcagcggcggtggtgatgggagggagagatgtgctatctgagaaggaagaaggagagtttgaacgcgcgttggcatttgtatcataacagagagcgcgta 34260253  T
Q  207 gtatttttcttcattaaagaattgnnnnnnncaagtcatttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatgggg 306  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34260252 gtatttttcttcattaaagaattgtttttttcaagtcatttaatcacaaccattcaatttaatttttacacatgtcacacatccatgacttgaaatgggg 34260153  T
Q  307 taaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34260152 taaattgaggaaaggaaaatggagcaaagatggactca 34260115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 13 - 343
Target Start/End: Original strand, 34261925 - 34262254
Alignment:
Q  13 agaaaagtttgactgaggatgatttaggggaggtgatgtggagcagaaggggaagagtgcgccataaaaggaagggagaggtgaggcggcaacggcagcg 112  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||  |||    
T  34261925 agaaaagtttgactgaggatgagttaggggaggtgatgtggagcagaagggaaagagtgcgccagaaaaggaagggagaggtgaggcggcaacggtggcg 34262024  T
Q  113 gcggtnnnnnnnnnnnnnnnagatgtgctatctgagaaggacgaaggagagtttgaacgcgcgttggcatttgtatcattacagaaagcgcgtagtattt 212  Q
    ||| |               ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||| |||||| ||    
T  34262025 gcgatggtgatgggagggagagatgtgctatctgagaaggaagaaggagagtttgtacgcgcgttggcatttgtatcataacagagagcgtgtagtactt 34262124  T
Q  213 ttcttcattaaagaattgnnnnnnncaagtcatttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaatt 312  Q
    ||||||||||||||||||       |||| |||||||||||| |||||||||||| ||| ||||||||||||| |||||| |||| ||||||||||||||    
T  34262125 ttcttcattaaagaattgctttttccaag-catttaatcacagccattcaatttattttatacacatgtcacacatccataacttaaaatggggtaaatt 34262223  T
Q  313 gaggaaaggaaaatggagcaaagatggactc 343  Q
    |||||||||||||||||||||||||| ||||    
T  34262224 gaggaaaggaaaatggagcaaagatgaactc 34262254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 344
Target Start/End: Original strand, 6829952 - 6830058
Alignment:
Q  238 caagtcatttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagat 337  Q
    |||| |||||||||||| ||||| | |||  ||| ||||||||||||| |||||| ||| |||||||||||||||||||||||  |||||||||||||||    
T  6829952 caagccatttaatcacagccattgattttcttttatacacatgtcacacatccattactagaaatggggtaaattgaggaaagtgaaatggagcaaagat 6830051  T
Q  338 ggactca 344  Q
    | |||||    
T  6830052 gcactca 6830058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 343
Target Start/End: Complemental strand, 6826663 - 6826558
Alignment:
Q  238 caagtcatttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagat 337  Q
    |||| |||||||||||| ||||| | |||  ||| ||||||||||||| |||||| | | |||||||||||||||||||||||  |||||||||||||||    
T  6826663 caagccatttaatcacagccattgattttcttttatacacatgtcacacatccattattagaaatggggtaaattgaggaaagtgaaatggagcaaagat 6826564  T
Q  338 ggactc 343  Q
    | ||||    
T  6826563 gcactc 6826558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 6829744 - 6829826
Alignment:
Q  13 agaaaagtttgactgaggatgatttaggggaggtgatgtggagcagaaggggaagagtgcgccataaaaggaagggagaggtg 95  Q
    |||||||||||||||| ||||||||||| |||||||||||||| | |||||| |||||||| |  | |||| |||||||||||    
T  6829744 agaaaagtttgactgacgatgatttaggtgaggtgatgtggagtataagggggagagtgcgtcggacaagggagggagaggtg 6829826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 343
Target Start/End: Original strand, 18066292 - 18066356
Alignment:
Q  278 atgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    |||||| | ||| ||||||| ||||||| |||||||||||||| ||||||||||||||||| ||||    
T  18066292 atgtcagacatctatgacttaaaatggg-taaattgaggaaagcaaaatggagcaaagatgaactc 18066356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 392
Target Start/End: Complemental strand, 27096041 - 27096011
Alignment:
Q  362 cctatcattaaatgagtctcaccatcattaa 392  Q
    |||||||||||||||||||||||||||||||    
T  27096041 cctatcattaaatgagtctcaccatcattaa 27096011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 238 - 343
Target Start/End: Complemental strand, 5956544 - 5956439
Alignment:
Q  238 caagtcatttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagat 337  Q
    |||| |||||||||||| ||||| | |||| ||| ||||||||||||| |||||| ||| |||||||||||||||||||||||  |||||||||||||||    
T  5956544 caagccatttaatcacagccattgattttattttatacacatgtcacacatccattactagaaatggggtaaattgaggaaagtgaaatggagcaaagat 5956445  T
Q  338 ggactc 343  Q
    | ||||    
T  5956444 gcactc 5956439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 238 - 343
Target Start/End: Complemental strand, 43844899 - 43844794
Alignment:
Q  238 caagtcatttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagat 337  Q
    |||| |||||||||||| ||||| | |||| ||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||  |||||||||||||||    
T  43844899 caagccatttaatcacagccattgattttattttttacacatgtcacacatccatgtctttaaatggggtaaattgagcaaagtgaaatggagcaaagat 43844800  T
Q  338 ggactc 343  Q
    | ||||    
T  43844799 gcactc 43844794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 200 - 344
Target Start/End: Original strand, 5960918 - 5961062
Alignment:
Q  200 gcgcgtagtatttttcttcattaaagaattgnnnnnnncaagtcatttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttga 299  Q
    ||||||||| ||||| |||||| ||||||||       |||| |||||||| ||| ||||| | |||  ||| ||||||||||||| |||||| ||| ||    
T  5960918 gcgcgtagtcttttttttcatttaagaattgcttttttcaagccatttaatgacagccattgattttcttttatacacatgtcacacatccattactaga 5961017  T
Q  300 aatggggtaaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    |||||||||||||||||||||  |||||||||||||||| |||||    
T  5961018 aatggggtaaattgaggaaagtgaaatggagcaaagatgcactca 5961062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 338
Target Start/End: Complemental strand, 4126825 - 4126698
Alignment:
Q  211 ttttcttcattaaagaattgnnnnnnncaagtcatttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaa 310  Q
    ||||| ||||||||||||||       |||| |||||||||||||||||| | |||| | ||||||||||||||  ||||||| ||| ||||||||||||    
T  4126825 ttttcctcattaaagaattgatttttccaagccatttaatcacaaccattgattttattatttacacatgtcacgcatccatgtcttcaaatggggtaaa 4126726  T
Q  311 ttgaggaaaggaaaatggagcaaagatg 338  Q
    ||||| ||||  ||||||||||||||||    
T  4126725 ttgagcaaagtgaaatggagcaaagatg 4126698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 211 - 336
Target Start/End: Original strand, 43845824 - 43845949
Alignment:
Q  211 ttttcttcattaaagaattgnnnnnnncaagtcatttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaa 310  Q
    ||||| ||||||||||||||       |||| |||||||||||||||||| | |||| ||||| || ||||| || ||||||| ||| ||||||||||||    
T  43845824 ttttcctcattaaagaattgctttttccaagccatttaatcacaaccattgattttattttttccatatgtcgcacatccatgtcttcaaatggggtaaa 43845923  T
Q  311 ttgaggaaaggaaaatggagcaaaga 336  Q
    ||||| ||||  ||||||||||||||    
T  43845924 ttgagcaaagtgaaatggagcaaaga 43845949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 5956752 - 5956670
Alignment:
Q  13 agaaaagtttgactgaggatgatttaggggaggtgatgtggagcagaaggggaagagtgcgccataaaaggaagggagaggtg 95  Q
    |||||||||||||||| ||||||||||| |||||||||||||| | |||||| |||||||| |  | |||| |||||||||||    
T  5956752 agaaaagtttgactgacgatgatttaggtgaggtgatgtggagtataagggggagagtgcgacggacaagggagggagaggtg 5956670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 39021034 - 39020956
Alignment:
Q  243 catttaatcacaaccattcaatttaatttttac-acatgtcacatatccatgacttgaaatggggtaaattgaggaaag 320  Q
    ||||||||||| |||||| | |||| ||||| | |||||||||| ||||||| ||||||||||||||||||||| ||||    
T  39021034 catttaatcacgaccattgattttatttttttccacatgtcacacatccatgtcttgaaatggggtaaattgagcaaag 39020956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 676041 - 676090
Alignment:
Q  343 caaaaaataggtggtgagacctatcattaaatgagtctcaccatcattaa 392  Q
    ||||||||| |||||||  |||||||||||||||||||||||||||||||    
T  676041 caaaaaatatgtggtgattcctatcattaaatgagtctcaccatcattaa 676090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 343
Target Start/End: Complemental strand, 35752423 - 35752326
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    |||||||||||||||| | |||| ||||  ||||||||| | ||| |||| |||||||||| ||||||||| |||  ||||||||||||| ||| ||||    
T  35752423 tttaatcacaaccattgattttatttttgccacatgtcatacatctatga-ttgaaatgggataaattgagcaaaccaaaatggagcaaacatgaactc 35752326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 32249390 - 32249345
Alignment:
Q  298 gaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    |||||||||||||||||  ||||| ||||||| |||||||||||||    
T  32249390 gaaatggggtaaattgaacaaaggcaaatggaacaaagatggactc 32249345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 35753035 - 35753137
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaat----tgaggaaaggaaaatggagcaaagatgga 340  Q
    |||||||||| ||||| | |||| ||||  ||||||||| | ||| ||||| |||||||||||||||    |||| |||   ||||||||||||||||||    
T  35753035 tttaatcacagccattgattttatttttgccacatgtcatacatctatgacgtgaaatggggtaaataaattgagtaaacataaatggagcaaagatgga 35753134  T
Q  341 ctc 343  Q
    |||    
T  35753135 ctc 35753137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 48831200 - 48831244
Alignment:
Q  332 aaagatggactcaaaaaataggtggtgagacctatcattaaatga 376  Q
    |||||| ||| |||||||||||||||| | |||||||||||||||    
T  48831200 aaagatagacacaaaaaataggtggtgtgtcctatcattaaatga 48831244  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 245 - 344
Target Start/End: Original strand, 7338769 - 7338868
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    |||||||||||||||| | |||| ||||| ||||||| ||| ||| |||||||||||||| ||||||||||||||   ||||||||||||||||||||||    
T  7338769 tttaatcacaaccattgattttattttttccacatgttacacatctatgacttgaaatggagtaaattgaggaaacataaatggagcaaagatggactca 7338868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 238 - 343
Target Start/End: Original strand, 2367506 - 2367611
Alignment:
Q  238 caagtcatttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagat 337  Q
    |||| |||||||||||  ||||| | |||| ||| ||||||||||||| |||||| ||| |||||||||||||||||||||||  |||||||||||||||    
T  2367506 caagccatttaatcacggccattgattttattttatacacatgtcacacatccattactagaaatggggtaaattgaggaaagtgaaatggagcaaagat 2367605  T
Q  338 ggactc 343  Q
    | ||||    
T  2367606 gcactc 2367611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 351
Target Start/End: Complemental strand, 7338088 - 7338001
Alignment:
Q  264 tttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactcaaaaaata 351  Q
    |||| ||||| ||||||||||||||| ||||||||||||||| ||||||||| |||   |||||||||||||||||| || |||||||    
T  7338088 tttattttttccacatgtcacatatctatgacttgaaatgggataaattgagaaaatataaatggagcaaagatggattctaaaaata 7338001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 2367298 - 2367380
Alignment:
Q  13 agaaaagtttgactgaggatgatttaggggaggtgatgtggagcagaaggggaagagtgcgccataaaaggaagggagaggtg 95  Q
    |||||||||||||||| ||||||||||| |||||||||||||| | |||||| |||||||| |  | |||| |||||||||||    
T  2367298 agaaaagtttgactgacgatgatttaggtgaggtgatgtggagtataagggggagagtgcgtcggacaagggagggagaggtg 2367380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 345
Target Start/End: Original strand, 49400311 - 49400357
Alignment:
Q  299 aaatggggtaaattgaggaaaggaaaatggagcaaagatggactcaa 345  Q
    ||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  49400311 aaatgggataaattgagcaaaggcaaatggagcaaagatggactcaa 49400357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 27890636 - 27890567
Alignment:
Q  275 cacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    ||||||||||| ||||||||    |||| || ||||||||| ||||| ||||||||||||||||||||||    
T  27890636 cacatgtcacacatccatgatggtaaataggataaattgagcaaaggcaaatggagcaaagatggactca 27890567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 49399590 - 49399549
Alignment:
Q  299 aaatggggtaaattgaggaaaggaaaatggagcaaagatgga 340  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  49399590 aaatggggtaaattgagcaaaggcaaatggagcaaagatgga 49399549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 27891311 - 27891355
Alignment:
Q  299 aaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||||| ||||||||| ||||  |||||||||||||||||||||    
T  27891311 aaatgggataaattgagtaaagataaatggagcaaagatggactc 27891355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 269 - 344
Target Start/End: Original strand, 36386029 - 36386104
Alignment:
Q  269 tttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||| ||||  |||||||||||||||| |||||    
T  36386029 tttttacacatgtcacacatccatgactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactca 36386104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 344
Target Start/End: Original strand, 36385812 - 36385887
Alignment:
Q  269 tttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||| ||||  |||||||||||||||| |||||    
T  36385812 tttttacacatgtcacacatccattactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactca 36385887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 36385567 - 36385649
Alignment:
Q  13 agaaaagtttgactgaggatgatttaggggaggtgatgtggagcagaaggggaagagtgcgccataaaaggaagggagaggtg 95  Q
    |||||||||||| ||| ||||||||||| |||||||||||||| | |||||| ||||||||||| | |||| |||||||||||    
T  36385567 agaaaagtttgattgacgatgatttaggtgaggtgatgtggagtataagggggagagtgcgccagacaagggagggagaggtg 36385649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 343
Target Start/End: Original strand, 39311361 - 39311440
Alignment:
Q  264 tttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    |||| ||||| ||||||||||| ||| ||||||| ||||||||||||||||| ||    |||||||||||||||||||||    
T  39311361 tttattttttccacatgtcacacatctatgacttaaaatggggtaaattgagaaatcttaaatggagcaaagatggactc 39311440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 39311122 - 39311170
Alignment:
Q  19 gtttgactgaggatgatttaggggaggtgatgtggagcagaaggggaag 67  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||||    
T  39311122 gtttgattaaggatgatttaggtgaggtgatgtggagcagaaggggaag 39311170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 343
Target Start/End: Original strand, 32159511 - 32159590
Alignment:
Q  264 tttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    |||| ||||| ||||||||||| ||||| |   |||||||||||||||||||||||   |||||||||||||||| ||||    
T  32159511 tttattttttccacatgtcacacatccaaggaatgaaatggggtaaattgaggaaacctaaatggagcaaagatgcactc 32159590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 39310475 - 39310396
Alignment:
Q  264 tttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    |||| ||||| ||||||||| | ||| || |||||||||||| ||||||||||||    |||||||||||||||||||||    
T  39310475 tttattttttccacatgtcatacatctataacttgaaatgggataaattgaggaatcttaaatggagcaaagatggactc 39310396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 344
Target Start/End: Original strand, 52238304 - 52238379
Alignment:
Q  269 tttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    |||| |||| ||||||| ||||||||    ||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  52238304 ttttaacacgtgtcacacatccatgaaggtaaatggggtaaattgagcaaaggcaaatgaagcaaagatggactca 52238379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 24484862 - 24484784
Alignment:
Q  264 tttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggact 342  Q
    |||| ||||| ||||||||||| ||| || ||||||||| || ||||||||||||    ||||||||||||||||||||    
T  24484862 tttattttttccacatgtcacacatctataacttgaaataggataaattgaggaatcttaaatggagcaaagatggact 24484784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 21857532 - 21857601
Alignment:
Q  269 tttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatg 338  Q
    ||||| ||| ||||| | ||| || |||| ||||||| ||||||||||||||| ||||||||||||||||    
T  21857532 tttttccacgtgtcagacatctataacttaaaatgggataaattgaggaaaggtaaatggagcaaagatg 21857601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 21913395 - 21913464
Alignment:
Q  269 tttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatg 338  Q
    ||||| ||| ||||| | ||| || |||| ||||||| ||||||||||||||| ||||||||||||||||    
T  21913395 tttttccacgtgtcagacatctataacttaaaatgggataaattgaggaaaggtaaatggagcaaagatg 21913464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 24485509 - 24485557
Alignment:
Q  19 gtttgactgaggatgatttaggggaggtgatgtggagcagaaggggaag 67  Q
    |||||| | ||||||||||||| ||||||||||||||||||| ||||||    
T  24485509 gtttgattaaggatgatttaggtgaggtgatgtggagcagaatgggaag 24485557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 52237679 - 52237635
Alignment:
Q  299 aaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||||||||||||||| ||||| ||||||||||||||| |||||    
T  52237679 aaatggggtaaattgagcaaaggcaaatggagcaaagatagactc 52237635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 3464916 - 3464985
Alignment:
Q  269 tttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatg 338  Q
    ||||| ||| ||||||| ||| || |||| ||||||   |||||||||||||| ||||||||||||||||    
T  3464916 tttttccacgtgtcacacatctataacttaaaatggaaaaaattgaggaaaggtaaatggagcaaagatg 3464985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 14087703 - 14087662
Alignment:
Q  296 ttgaaatggggtaaattgaggaaaggaaaatggagcaaagat 337  Q
    |||||||||||||||||||||||||  |||||||| ||||||    
T  14087703 ttgaaatggggtaaattgaggaaagttaaatggagtaaagat 14087662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 55633619 - 55633554
Alignment:
Q  278 atgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    |||||||| ||||||||    ||||||| ||||||||| ||||| ||| |||||||||||||||||    
T  55633619 atgtcacacatccatgatggtaaatgggataaattgagcaaaggcaaacggagcaaagatggactc 55633554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 31414848 - 31414916
Alignment:
Q  275 cacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||||||||||||| || |  ||||| ||  |||||||||||||   |||||||||||||||||||||    
T  31414848 cacatgtcacatatcaataaagtgaaaaggaataaattgaggaaacttaaatggagcaaagatggactc 31414916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 390
Target Start/End: Original strand, 56453830 - 56453886
Alignment:
Q  334 agatggactcaaaaaataggtggtgagacctatcattaaatgagtctcaccatcatt 390  Q
    |||| ||| |||||||||||||||| | ||||||||||| || ||| ||||||||||    
T  56453830 agatagacacaaaaaataggtggtgggtcctatcattaagtgggtcccaccatcatt 56453886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 343
Target Start/End: Complemental strand, 10961 - 10856
Alignment:
Q  238 caagtcatttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagat 337  Q
    |||| |||||||||||| ||||| | | || | ||||||||||||||| ||||||| ||| ||||||||||||||||| ||||  |||||||||||||||    
T  10961 caagccatttaatcacagccattgattctattatttacacatgtcacacatccatgtcttcaaatggggtaaattgagcaaagtgaaatggagcaaagat 10862  T
Q  338 ggactc 343  Q
    | ||||    
T  10861 gcactc 10856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 11176 - 11096
Alignment:
Q  13 agaaaagtttgactgaggatgatttaggggaggtgatgtggagcagaaggggaagagtgcgccataaaaggaagggagagg 93  Q
    |||||||||||||||| ||||||||||| |||||||||||||| | |||||| ||||||||||  | |||| |||||||||    
T  11176 agaaaagtttgactgacgatgatttaggtgaggtgatgtggagtataagggggagagtgcgccggacaagggagggagagg 11096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 238 - 334
Target Start/End: Original strand, 17942977 - 17943073
Alignment:
Q  238 caagtcatttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaa 334  Q
    |||| |||||||||||| ||||| | |||| | ||||||||||||||| ||||||| ||| ||||||||||||||||| ||||  ||||||||||||    
T  17942977 caagccatttaatcacagccattgattttattatttacacatgtcacacatccatgtcttcaaatggggtaaattgagcaaagtgaaatggagcaaa 17943073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 42503672 - 42503730
Alignment:
Q  13 agaaaagtttgactgaggatgatttaggggaggtgatgtggagcagaaggggaagagtg 71  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  42503672 agaaaagtttgactgagaatgatttaggtgaggtgatgtggagcagaaggggaaaagtg 42503730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 347
Target Start/End: Complemental strand, 17938275 - 17938171
Alignment:
Q  243 catttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggact 342  Q
    |||||||||||| ||||| | |||| ||||| ||||| || || |||||||  || ||||||||||||||||| ||||  |||||||||||||||| |||    
T  17938275 catttaatcacacccattgattttattttttccacatttcgcacatccatgtattcaaatggggtaaattgagcaaagtgaaatggagcaaagatgcact 17938176  T
Q  343 caaaa 347  Q
    |||||    
T  17938175 caaaa 17938171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 17942765 - 17942845
Alignment:
Q  13 agaaaagtttgactgaggatgatttaggggaggtgatgtggagcagaaggggaagagtgcgccataaaaggaagggagagg 93  Q
    |||||||||||||||| ||||||||||| |||||||||||||| | |||||| ||||||||||  | |||| |||||||||    
T  17942765 agaaaagtttgactgacgatgatttaggtgaggtgatgtggagtataagggggagagtgcgccggacaagggagggagagg 17942845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 340
Target Start/End: Complemental strand, 42503124 - 42503029
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatgga 340  Q
    |||||||||| ||||| | |||| |||||  |||||||||| ||| ||||  |||||||||||||||||||||||   ||||||||||||||||||    
T  42503124 tttaatcacagccattgattttattttttctacatgtcacacatctatgatatgaaatggggtaaattgaggaaacttaaatggagcaaagatgga 42503029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 344
Target Start/End: Complemental strand, 42578807 - 42578708
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    ||||||| || ||||| | |||| ||||  ||||||||| | ||| ||||||||||||||||||||||||| |||   ||||||||||||||||||||||    
T  42578807 tttaatctcagccattgattttatttttgccacatgtcatacatctatgacttgaaatggggtaaattgagcaaacataaatggagcaaagatggactca 42578708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 7870343 - 7870441
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    |||||||||||||||| | |||| ||||| || |||||||| ||| || |||| ||||||||||||||||| ||    |||||||||||||||||||||    
T  7870343 tttaatcacaaccattgattttattttttccatatgtcacacatctataacttcaaatggggtaaattgagaaagtctaaatggagcaaagatggactc 7870441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 42503892 - 42503990
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    |||||||||| ||||| | |||| ||||| ||||||||||| ||| ||||  || |||||||||||||||||||    |||||||||||||||||||||    
T  42503892 tttaatcacagccattaattttattttttccacatgtcacacatctatgatatggaatggggtaaattgaggaagcctaaatggagcaaagatggactc 42503990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 338
Target Start/End: Original strand, 8814483 - 8814540
Alignment:
Q  281 tcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatg 338  Q
    ||||| |||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  8814483 tcacacatccatgacttgtaatggggtaaattgaggaaaccaaaatggagcaaagatg 8814540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 344
Target Start/End: Complemental strand, 38443793 - 38443694
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    ||||||||||  |||| | |||| |||||  |||||||||  | | ||||||||||||||||||||||| |||||   ||||||||||||||||||||||    
T  38443793 tttaatcacagtcattgattttattttttctacatgtcacgcaactatgacttgaaatggggtaaattgtggaaacttaaatggagcaaagatggactca 38443694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 315
Target Start/End: Original strand, 11520061 - 11520131
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgag 315  Q
    |||||||||||||||| | |||| ||||| ||||||||||| ||| ||||||| |||||| ||||||||||    
T  11520061 tttaatcacaaccattgattttatttttttcacatgtcacacatctatgactttaaatggtgtaaattgag 11520131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 12203313 - 12203411
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||||||||| |||| | | || ||||| |||||  |||| ||| ||||||||||||||  |||||||||||||   |||||||||||||||||||||    
T  12203313 tttaatcacaatcattgattgtatttttttcacataccacacatctatgacttgaaatggtataaattgaggaaaatgaaatggagcaaagatggactc 12203411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 12447741 - 12447839
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||||||||| |||| | | || ||||| |||||  |||| ||| ||||||||||||||  |||||||||||||   |||||||||||||||||||||    
T  12447741 tttaatcacaatcattgattgtatttttttcacataccacacatctatgacttgaaatggtataaattgaggaaaatgaaatggagcaaagatggactc 12447839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 6462616 - 6462685
Alignment:
Q  275 cacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    ||||||||| | ||| | ||||||||||||||||||||||| |||   ||||||||||||||||||||||    
T  6462616 cacatgtcatacatctaggacttgaaatggggtaaattgagcaaacataaatggagcaaagatggactca 6462685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 344
Target Start/End: Complemental strand, 11519424 - 11519349
Alignment:
Q  269 tttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    ||||| ||||||||||| ||| |||| ||||||||||||||||||| ||||   |||| ||||||||||| |||||    
T  11519424 tttttccacatgtcacacatctatgatttgaaatggggtaaattgaagaaacctaaattgagcaaagatgaactca 11519349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 336
Target Start/End: Original strand, 38444435 - 38444526
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaaga 336  Q
    ||||||||||||| || | || | ||||| ||||||||||| ||| || ||||||||| ||||||||||||||||   ||||||||| ||||    
T  38444435 tttaatcacaacccttgatttaactttttccacatgtcacacatctataacttgaaattgggtaaattgaggaaatctaaatggagctaaga 38444526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 38443963 - 38443917
Alignment:
Q  13 agaaaagtttgactgaggatgatttaggggaggtgatgtggagcaga 59  Q
    |||||||||||||  ||||||||||||| ||||||||||||||||||    
T  38443963 agaaaagtttgaccaaggatgatttaggtgaggtgatgtggagcaga 38443917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 12202742 - 12202689
Alignment:
Q  291 atgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    ||||||||||||| ||||||||||| ||| | ||||| ||||||||||||||||    
T  12202742 atgacttgaaatgaggtaaattgagcaaaaggaaatgaagcaaagatggactca 12202689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 12447170 - 12447117
Alignment:
Q  291 atgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    ||||||||||||| ||||||||||| ||| | ||||| ||||||||||||||||    
T  12447170 atgacttgaaatgaggtaaattgagcaaaaggaaatgaagcaaagatggactca 12447117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 12202884 - 12202836
Alignment:
Q  13 agaaaagtttgactgaggatgatttaggggaggtgatgtggagcagaag 61  Q
    ||||| |||||||||||||||||||||| ||  ||||||||||||||||    
T  12202884 agaaatgtttgactgaggatgatttaggtgacatgatgtggagcagaag 12202836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 12447312 - 12447264
Alignment:
Q  13 agaaaagtttgactgaggatgatttaggggaggtgatgtggagcagaag 61  Q
    ||||| |||||||||||||||||||||| ||  ||||||||||||||||    
T  12447312 agaaatgtttgactgaggatgatttaggtgacatgatgtggagcagaag 12447264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 343
Target Start/End: Complemental strand, 6461977 - 6461880
Alignment:
Q  246 ttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||||||||||||| | |||| ||||  ||||||||| | ||| || ||||||||||   ||||||||| |||   |||||||||||||||| ||||    
T  6461977 ttaatcacaaccattgattttatttttgccacatgtcatacatctataacttgaaatgaaataaattgagcaaaccgaaatggagcaaagatgaactc 6461880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 35029831 - 35029930
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttac-acatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    |||||||||||||||| | |||  ||||| | |||||||||| ||| |||||||||||||||||||||||||||||   ||||||||||||||| |||||    
T  35029831 tttaatcacaaccattgattttgtttttttccacatgtcacacatctatgacttgaaatggggtaaattgaggaaacctaaatggagcaaagatagactc 35029930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 264 - 343
Target Start/End: Original strand, 34229064 - 34229143
Alignment:
Q  264 tttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    |||| ||||| ||||||||||| ||| ||||||| ||||||||||||||||||||    |||||||||||||||||||||    
T  34229064 tttattttttccacatgtcacacatctatgacttaaaatggggtaaattgaggaatcttaaatggagcaaagatggactc 34229143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 34228221 - 34228147
Alignment:
Q  269 tttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||| ||||||||||| ||| || |||||||||||||||||||||||||    |||||||||||||||||||||    
T  34228221 tttttccacatgtcacacatctataacttgaaatggggtaaattgaggaatcttaaatggagcaaagatggactc 34228147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 337
Target Start/End: Complemental strand, 39062317 - 39062225
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagat 337  Q
    ||||||||||| |||||| |||| ||||  ||||||||| | ||| ||||||||||||||| ||||||||  |||  ||||||||||||||||    
T  39062317 tttaatcacaaacattcattttatttttgccacatgtcatacatctatgacttgaaatgggataaattgaacaaaccaaaatggagcaaagat 39062225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 319
Target Start/End: Complemental strand, 1233798 - 1233724
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaa 319  Q
    |||||||  ||||||| | |||| ||||  ||| ||||||| ||||||||||| |||||||||||||||||||||    
T  1233798 tttaatcttaaccatttattttatttttgccacgtgtcacacatccatgacttcaaatggggtaaattgaggaaa 1233724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 320
Target Start/End: Original strand, 29762228 - 29762305
Alignment:
Q  243 catttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaag 320  Q
    ||||||||||||| |||| |  ||| ||| | ||||||||||| ||||||| ||||| ||||||||||||||| ||||    
T  29762228 catttaatcacaatcattgatcttattttatccacatgtcacacatccatgtcttgagatggggtaaattgagcaaag 29762305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 34228833 - 34228870
Alignment:
Q  31 atgatttaggggaggtgatgtggagcagaaggggaaga 68  Q
    |||||||||| |||||||||||||||||||||||||||    
T  34228833 atgatttaggtgaggtgatgtggagcagaaggggaaga 34228870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 20267201 - 20267164
Alignment:
Q  307 taaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  20267201 taaattgagcaaaggtaaatggagcaaagatggactca 20267164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 33361083 - 33361046
Alignment:
Q  307 taaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  33361083 taaattgagcaaaggtaaatggagcaaagatggactca 33361046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 6205448 - 6205492
Alignment:
Q  299 aaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||||||||||||||||||    |||||||||||||||||||||    
T  6205448 aaatggggtaaattgaggaagcctaaatggagcaaagatggactc 6205492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 20269022 - 20269058
Alignment:
Q  307 taaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  20269022 taaattgagcaaaggtaaatggagcaaagatggactc 20269058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 39062900 - 39062968
Alignment:
Q  275 cacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||||||| | ||| |||||||||||| |||||||||||  |||   ||||||| |||||||||||||    
T  39062900 cacatgtcatacatctatgacttgaaattgggtaaattgaacaaacataaatggaacaaagatggactc 39062968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 42148728 - 42148680
Alignment:
Q  295 cttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||||||||| ||||||||| |||   |||||||||||||||||||||    
T  42148728 cttgaaatgggataaattgagaaaacataaatggagcaaagatggactc 42148680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 343
Target Start/End: Complemental strand, 120171 - 120073
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||||| |||||||| | |||| ||||| || |||||||  ||| || |||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  120171 tttaatctcaaccatttattttattttttccatatgtcacgcatctataacttgaaatggggtaaattgaggaaagctaaatggagcaaagatgaactc 120073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 392
Target Start/End: Complemental strand, 35650385 - 35650325
Alignment:
Q  332 aaagatggactcaaaaaataggtggtgagacctatcattaaatgagtctcaccatcattaa 392  Q
    |||||| ||| |||||||||||||||| | ||||| ||||||||| | |||||||||||||    
T  35650385 aaagatagacacaaaaaataggtggtgggtcctattattaaatgaatttcaccatcattaa 35650325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 2639779 - 2639717
Alignment:
Q  276 acatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatg 338  Q
    |||||| ||| ||| || |||||||||||||||||||||| |||   ||||||||||||||||    
T  2639779 acatgttacacatctataacttgaaatggggtaaattgagcaaaaataaatggagcaaagatg 2639717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 338
Target Start/End: Original strand, 40720332 - 40720401
Alignment:
Q  269 tttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatg 338  Q
    ||||| ||| ||||||| ||| || |||| |||| ||  |||||||||||||| ||||||||||||||||    
T  40720332 tttttccacgtgtcacacatctataacttaaaataggaaaaattgaggaaaggtaaatggagcaaagatg 40720401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 29643050 - 29643108
Alignment:
Q  13 agaaaagtttgactgaggatgatttaggggaggtgatgtggagcagaaggggaagagtg 71  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  29643050 agaaaagtttgactgagaatgatttaggtgaggtgatgtggagcagaaggggaaaagtg 29643108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 28229421 - 28229470
Alignment:
Q  343 caaaaaataggtggtgagacctatcattaaatgagtctcaccatcattaa 392  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28229421 caaaaaataggtggtgagtcctatcattaaatgagtctcaccatcattaa 28229470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 23514486 - 23514555
Alignment:
Q  275 cacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    ||||||||||| ||||||||    ||||||||||||||||| ||||| ||||||||||||||||||||||    
T  23514486 cacatgtcacacatccatgatagtaaatggggtaaattgagcaaaggcaaatggagcaaagatggactca 23514555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 342
Target Start/End: Complemental strand, 35903790 - 35903690
Alignment:
Q  244 atttaatcacaaccattcaatttaatttttac--acatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggac 341  Q
    ||||||||||||||||| | |||| ||||| |  |||||||||| |||||| ||||||||||||||||||||||  ||   ||||||||||||||| |||    
T  35903790 atttaatcacaaccattgattttattttttccccacatgtcacacatccataacttgaaatggggtaaattgagagaacctaaatggagcaaagatagac 35903691  T
Q  342 t 342  Q
    |    
T  35903690 t 35903690  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 40810290 - 40810349
Alignment:
Q  279 tgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatg 338  Q
    ||||||| ||||||||||| ||||||| |||||||||||||   ||||||||||||||||    
T  40810290 tgtcacacatccatgacttaaaatgggataaattgaggaaacttaaatggagcaaagatg 40810349  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 44312339 - 44312437
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||||||||||| ||  ||||||||||  || ||||||   ||| | | ||| |||||||||||||||||||||   |||||||||||||||||||||    
T  44312339 tttaatcacaaccgttatatttaattttgccatatgtcatcaatctaagtcttaaaatggggtaaattgaggaaacataaatggagcaaagatggactc 44312437  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 392
Target Start/End: Complemental strand, 48950663 - 48950617
Alignment:
Q  346 aaaataggtggtgagacctatcattaaatgagtctcaccatcattaa 392  Q
    |||||||||||||   |||||||||||||||||||||||||||||||    
T  48950663 aaaataggtggtggatcctatcattaaatgagtctcaccatcattaa 48950617  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 392
Target Start/End: Original strand, 33338193 - 33338239
Alignment:
Q  346 aaaataggtggtgagacctatcattaaatgagtctcaccatcattaa 392  Q
    |||||||| |||| | ||||||||||||||||||||| |||||||||    
T  33338193 aaaataggaggtgggtcctatcattaaatgagtctcatcatcattaa 33338239  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 40809643 - 40809585
Alignment:
Q  279 tgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagat 337  Q
    ||||||| ||||||||||| ||||||  |||||||||||||   |||||||||||||||    
T  40809643 tgtcacacatccatgacttaaaatggaataaattgaggaaacccaaatggagcaaagat 40809585  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 44320844 - 44320810
Alignment:
Q  309 aattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||||| |||||||||||||||||||||||||||    
T  44320844 aattgagcaaaggaaaatggagcaaagatggactc 44320810  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 1772935 - 1772870
Alignment:
Q  275 cacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatgga 340  Q
    ||||||||||||||||||||    ||||||||||||||||| |||   |||||||||||| |||||    
T  1772935 cacatgtcacatatccatgatagtaaatggggtaaattgagcaaacttaaatggagcaaatatgga 1772870  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 343
Target Start/End: Complemental strand, 16436589 - 16436524
Alignment:
Q  278 atgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    |||||||| ||||||||    ||||||| ||||||||| ||||| ||| |||||||||||||||||    
T  16436589 atgtcacacatccatgatggtaaatgggataaattgagcaaaggcaaacggagcaaagatggactc 16436524  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 23513732 - 23513687
Alignment:
Q  299 aaatggggtaaattgaggaaaggaaaatggagcaaagatggactca 344  Q
    ||||||| ||||||||| ||||  ||||||||||||||||||||||    
T  23513732 aaatgggataaattgagcaaagataaatggagcaaagatggactca 23513687  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 342
Target Start/End: Complemental strand, 29642497 - 29642400
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggact 342  Q
    |||||||||| ||||| | | || ||||| ||||||||||| |||  |||  ||||||||| ||||||||||||    |||||||||||| |||||||    
T  29642497 tttaatcacatccattgattctattttttccacatgtcacacatctttgatatgaaatgggataaattgaggaagcttaaatggagcaaaaatggact 29642400  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 8923627 - 8923695
Alignment:
Q  275 cacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||||||||| ||||||||    ||||||||||||| ||| |||   |||||||||||||||||||||    
T  8923627 cacatgtcacacatccatgatggtaaatggggtaaatggagcaaacccaaatggagcaaagatggactc 8923695  T

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Target: scaffold0098 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 343
Target Start/End: Complemental strand, 52362 - 52264
Alignment:
Q  245 tttaatcacaaccattcaatttaatttttacacatgtcacatatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactc 343  Q
    ||||||| ||||||||  ||||  |||| |||||||||||| ||| |||  |||||| || |||||| |||||||  ||||||||||||||||| ||||    
T  52362 tttaatctcaaccattggatttgtttttaacacatgtcacacatctatgcattgaaaaggagtaaatggaggaaacaaaaatggagcaaagatgaactc 52264  T

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Target: scaffold0291 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 19375 - 19444
Alignment:
Q  275 cacatgtcacatatccatgacttgaaatggggtaaattgaggaaag-gaaaatggagcaaagatggactc 343  Q
    ||||||||||||||||| | ||  ||||||||||||||||| || |  ||||||||||||||||| ||||    
T  19375 cacatgtcacatatccacgtctaaaaatggggtaaattgagaaatgataaaatggagcaaagatgcactc 19444  T

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