View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19822_low_7 (Length: 301)
Name: NF19822_low_7
Description: NF19822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19822_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 34691313 - 34691588
Alignment:
| Q |
16 |
caagaatcatgtactaatttcatatcaacgtaattgtatgaccttcacattatctatgcaagaatcatgtagtaatttcatattatcataccttggatcc |
115 |
Q |
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| T |
34691313 |
caagaatcatgtactaatttcatatcaacgtaattgtatgaccttcacattatctatgcaagaatcatgtagtaatttcatattatcataccttggatcc |
34691412 |
T |
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| Q |
116 |
gtagcatcccttctcataaaccatcaactcctccacccccattttttgaagatatcaccgtcaactatttgatgaactcagattgcctctactggaacca |
215 |
Q |
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| T |
34691413 |
gtagcatcccttctcacaaaccatcaactcctccacccccattttttgaagatatcaccggcaactatttgatgaactcatattgcctctactggaacca |
34691512 |
T |
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| Q |
216 |
ttcggtggtaaacactcttttcaaccaacaagacacagcggctgtgattacaacgcctctctttcgtcgtcctttg |
291 |
Q |
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| T |
34691513 |
ttcggtggtaaacactcttttcaaccaacaagacgcagcggctgtgattacaacgcctctctttcgtcgtcctttg |
34691588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 52966053 - 52965959
Alignment:
| Q |
106 |
ccttggatccgtagcatcccttctcataaaccatcaactcctccacccccattttttgaagatatcaccgtcaactatttgatgaactcagattg |
200 |
Q |
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| T |
52966053 |
ccttggatacgtagcattccttcacataaaccttcaactacaccacccccattttttgaagacctcacagtcaatcaattgatgaattcagattg |
52965959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 51492966 - 51492872
Alignment:
| Q |
106 |
ccttggatccgtagcatcccttctcataaaccatcaactcctccacccccattttttgaagatatcaccgtcaactatttgatgaactcagattg |
200 |
Q |
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| T |
51492966 |
ccttggatacataacattccttcacataaaccttcaactccgccacccccattttttgaagacctcacagtcaattaattgatgaattcagattg |
51492872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 42577962 - 42577853
Alignment:
| Q |
106 |
ccttggatccgtagcatcccttctcataaaccatcaactcctccacccccattttttgaagatatcaccgtcaactatttgatgaactcagattgcctct |
205 |
Q |
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|||||||| |||||||| ||||| || ||||| |||||||| ||||||| |||||||||||| |||| ||||| | |||||||| |||||||| |||| |
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| T |
42577962 |
ccttggatacgtagcattccttcacacaaaccttcaactccgccacccctattttttgaagacctcacagtcaatcaattgatgaattcagattgtctct |
42577863 |
T |
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| Q |
206 |
actggaacca |
215 |
Q |
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|||||||| |
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| T |
42577862 |
catggaacca |
42577853 |
T |
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