View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19822_low_9 (Length: 251)
Name: NF19822_low_9
Description: NF19822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19822_low_9 |
 | |
|
| [»] chr3 (17 HSPs) |
| |
|
| [»] scaffold1643 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 7748856 - 7748622
Alignment:
| Q |
17 |
atagaaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttggcgattgtcatttacccaatttagttactcttgaatt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7748856 |
atagaaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttggcgattatcatttacccaatttagttactcttgaatt |
7748757 |
T |
|
| Q |
117 |
gttgggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7748756 |
gttgggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggt |
7748657 |
T |
|
| Q |
217 |
gcagagatttgtggctataattcatcaaatgtttc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7748656 |
gcagagatttgtggctataattcatcaaatgtttc |
7748622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 21 - 247
Target Start/End: Complemental strand, 6898938 - 6898712
Alignment:
| Q |
21 |
aaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttggcgattgtcatttacccaatttagttactcttgaattgttg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||| |||| ||||||||| |
|
|
| T |
6898938 |
aaacctcatgaggctaaccatcaaagactacagaggcagtagatttccaaattggcttggggttcatcatttacccaatttagtatctctagaattgttg |
6898839 |
T |
|
| Q |
121 |
ggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggtgcag |
220 |
Q |
| |
|
|||||||||||| |||||||||| || ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| || |||||| ||| |
|
|
| T |
6898838 |
ggatgtaaacttcgttcccagttgcccccacttgggcagttaccctctctcaagaagctttccatttcaggctgtgatggaatagatatcattggtacag |
6898739 |
T |
|
| Q |
221 |
agatttgtggctataattcatcaaatg |
247 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
6898738 |
agatttgtggctacaattcatcaaatg |
6898712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 6141140 - 6140908
Alignment:
| Q |
17 |
atagaaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttggcgattgtcatttacccaatttagttactcttgaatt |
116 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||| |||||||||| |
|
|
| T |
6141140 |
atagaaacctcatgaggctcaccatcaatgactacagaggtagtagctttcctaattggcttggggatcatcatctacccaatttagtatctcttgaatt |
6141041 |
T |
|
| Q |
117 |
gttgggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggt |
216 |
Q |
| |
|
||||||||||| || ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
6141040 |
gttgggatgtacacactgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggaatagagatcattggt |
6140941 |
T |
|
| Q |
217 |
gcagagatttgtggctataattcatcaaatgtt |
249 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |
|
|
| T |
6140940 |
tcagagttttgcagctataattcatcaaatgtt |
6140908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 6915955 - 6915721
Alignment:
| Q |
17 |
atagaaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttggcgattgtcatttacccaatttagttactcttgaatt |
116 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |||| ||||||||| |||||||| |||||||||| |
|
|
| T |
6915955 |
atagaaatctcatgaggctcaccatcaaagactatggaggcagtagctttccatattggcttggagattatcatttaccaaatttagtatctcttgaatt |
6915856 |
T |
|
| Q |
117 |
gttgggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggt |
216 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| || |||||| |
|
|
| T |
6915855 |
gttgggatgtaaactccgttcccagttgccgccacttgggcagttcccctctctcaagaagctttttatttcaggctgtgatggaatagaaatcattggt |
6915756 |
T |
|
| Q |
217 |
gcagagatttgtggctataattcatcaaatgtttc |
251 |
Q |
| |
|
||||| | | |||||| ||||||||||||||||| |
|
|
| T |
6915755 |
acagagttctatggctacaattcatcaaatgtttc |
6915721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 6850458 - 6850686
Alignment:
| Q |
20 |
gaaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttggcgattgtcatttacccaatttagttactcttgaattgtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| || |||| |||||||||||||||||| ||||||| ||||| |
|
|
| T |
6850458 |
gaaacctcatgaggctaaccatcaaagactaccgaggcagtagcttcccatattggctcggggattatcatttacccaatttagtatctcttga-ttgtt |
6850556 |
T |
|
| Q |
120 |
gggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggtgca |
219 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||| ||||||||||||||||| |||||||||||||| |||||| || |
|
|
| T |
6850557 |
gggatgtaaacaccattcccagtttccatcacttgggctgttcccctctctcaagaatctttccatttcaggctgtgatggaatagagatcattggtcca |
6850656 |
T |
|
| Q |
220 |
gagatttgtggctataattcatcaaatgtt |
249 |
Q |
| |
|
||| ||| ||||| ||||||||||||||| |
|
|
| T |
6850657 |
gagttttacggctacaattcatcaaatgtt |
6850686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 6258056 - 6257824
Alignment:
| Q |
17 |
atagaaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttggcgattgtcatttacccaatttagttactcttgaatt |
116 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||| | || |||| |||||||| |||||||||| |
|
|
| T |
6258056 |
atagaaacctcatgaggctcaccatcaatgactacagaggtagtagctttccaaattggcttggggatcttaatctaccaaatttagtatctcttgaatt |
6257957 |
T |
|
| Q |
117 |
gttgggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggt |
216 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
6257956 |
agtgggatgtaaacattgttcccagttgccaccacttgggaagttcccttctctcaagaagctttccatttcaggctgtcatggaataaagatcattggt |
6257857 |
T |
|
| Q |
217 |
gcagagatttgtggctataattcatcaaatgtt |
249 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| |
|
|
| T |
6257856 |
tcagagttttgcggctataattcatcaaatgtt |
6257824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 6592528 - 6592760
Alignment:
| Q |
17 |
atagaaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttggcgattgtcatttacccaatttagttactcttgaatt |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||||| | |||||||| |
|
|
| T |
6592528 |
atagaaacctcatgaggctcaccatcaaagactacagaggcagaagctttccaaattggcttggcgatctttatttacccaagttagtatcccttgaatt |
6592627 |
T |
|
| Q |
117 |
gttgggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggt |
216 |
Q |
| |
|
||||||||||||| | |||| | || ||| ||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||| |||||| |
|
|
| T |
6592628 |
gttgggatgtaaattccattccgaattgccaccacttgggcagttcccctctctcaagaagctttccttttcaggctgtgatggaatagagatcattggt |
6592727 |
T |
|
| Q |
217 |
gcagagatttgtggctataattcatcaaatgtt |
249 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| |
|
|
| T |
6592728 |
acagaattttacggctataattcatcaaatgtt |
6592760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 6723258 - 6723474
Alignment:
| Q |
21 |
aaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttggcgattgtcatttacccaatttagttactcttgaattgttg |
120 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| || ||||||||||||||||||| |||||||||||||| |
|
|
| T |
6723258 |
aaacctcatgaggctcaccatcaaagactatggaggcagtagctttccaaattgggttgggtatcgtcatttacccaatttagtatctcttgaattgttg |
6723357 |
T |
|
| Q |
121 |
ggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggtgcag |
220 |
Q |
| |
|
||||||||| | ||||||||||||||| ||||||||||||||| || |||| |||||||||||||||||||||| ||||||||||||| ||||| ||| |
|
|
| T |
6723358 |
ggatgtaaattctgttcccagttaccaccacttgggcagttcccctttctcgagaagctttccatttcaggctgtgatggaatagagaccattggaacag |
6723457 |
T |
|
| Q |
221 |
agatttgtggctataat |
237 |
Q |
| |
|
|| |||| ||||||||| |
|
|
| T |
6723458 |
agttttgcggctataat |
6723474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 13271728 - 13271960
Alignment:
| Q |
17 |
atagaaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttggcgattgtcatttacccaatttagttactcttgaatt |
116 |
Q |
| |
|
||||| |||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||||| |
|
|
| T |
13271728 |
atagacacctcatgagactcaccatcaatgactacagaggtagtagctttccaaattggcttggggatcatcatctacccaatttagtatctcttgaatt |
13271827 |
T |
|
| Q |
117 |
gttgggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggt |
216 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| ||||||||||||| | |||||| |||||||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
13271828 |
gttgggatgtaaactctgttcccagttgccaccacttgggcagttgccttctctcgagaagctttccatttctggctgtcatggaatagagatcattggt |
13271927 |
T |
|
| Q |
217 |
gcagagatttgtggctataattcatcaaatgtt |
249 |
Q |
| |
|
||||| |||| ||||||||| ||||||||||| |
|
|
| T |
13271928 |
tcagagttttgcggctataatccatcaaatgtt |
13271960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 6167745 - 6167524
Alignment:
| Q |
17 |
atagaaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttggcgattgtcatttacccaatttagttactcttgaatt |
116 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||| ||||||||||||| |||||||||| |
|
|
| T |
6167745 |
atagaaatctcatgaggctcaccatcaatgactacagaggtagtagctttccaaattggcttggggatcatcatctacccaatttagtatctcttgaatt |
6167646 |
T |
|
| Q |
117 |
gttgggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggt |
216 |
Q |
| |
|
||| |||||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||| |
|
|
| T |
6167645 |
gtttggatgtaaacactgttcccagttgccaccacttgggcagttccattctctcaagaagctttccatttccggctgtcatggaatagagaacattggt |
6167546 |
T |
|
| Q |
217 |
gcagagatttgtggctataatt |
238 |
Q |
| |
|
||||| ||| |||||||||| |
|
|
| T |
6167545 |
tcagagtttttcggctataatt |
6167524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 6236579 - 6236347
Alignment:
| Q |
17 |
atagaaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttggcgattgtcatttacccaatttagttactcttgaatt |
116 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||| |||||||||| |
|
|
| T |
6236579 |
atagaaatctcatgaggctcggcatcaatgactacagaggtagtagctttcctaattggcttggggatcatcatctacccaatttagtatctcttgaatt |
6236480 |
T |
|
| Q |
117 |
gttgggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggt |
216 |
Q |
| |
|
||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||| || |||||||| | | |||||| |
|
|
| T |
6236479 |
gttgggatgtaaatattgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatatcaggatgtcatggaataacgttcattggt |
6236380 |
T |
|
| Q |
217 |
gcagagatttgtggctataattcatcaaatgtt |
249 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| |
|
|
| T |
6236379 |
tcagagttttgcggctataattcatcaaatgtt |
6236347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 6881366 - 6881138
Alignment:
| Q |
21 |
aaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttggcgattgtcatttacccaatttagttactcttgaattgttg |
120 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||| |||||||||| |||||||| |||||||||||||| |
|
|
| T |
6881366 |
aaacctcacgagtctaaccatcaaagactacagaggcggtagctttccaaactggcttggggatcgtcatttaccaaatttagtatctcttgaattgttg |
6881267 |
T |
|
| Q |
121 |
ggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggtgcag |
220 |
Q |
| |
|
||||||||| | ||||||||| ||| | ||||||||||| | ||||||||||||| |||||||||| |||| ||||||||||| ||||||||| ||| |
|
|
| T |
6881266 |
ggatgtaaaatccattcccagttgccaccgcttgggcagtttccctctctcaagaagtgttccatttcaagctgtgatggaatagaaattattggtacag |
6881167 |
T |
|
| Q |
221 |
agatttgtggctataattcatcaaatgtt |
249 |
Q |
| |
|
|| || ||||||||||||||| ||||| |
|
|
| T |
6881166 |
agtttctcggctataattcatcagatgtt |
6881138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 6264539 - 6264304
Alignment:
| Q |
17 |
atagaaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttggcgattgtcatt---tacccaatttagttactcttga |
113 |
Q |
| |
|
||||||| |||| |||||| | |||||| ||||||||||| ||||||||||| ||||||||||| ||| |||| || |||||||| | ||||||| |
|
|
| T |
6264539 |
atagaaatctcacgaggctcagcatcaatgactacagaggtagtagctttcctaattggcttggggatcatcatcatctagccaatttattatctcttga |
6264440 |
T |
|
| Q |
114 |
attgttgggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattatt |
213 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||| |
|
|
| T |
6264439 |
attgttgggatgtacacactgttcccagttgccaccacttgggcagttcccttctctcaagaagctttccatttcaggctgtcatggagtagagatcatt |
6264340 |
T |
|
| Q |
214 |
ggtgcagagatttgtggctataattcatcaaatgtt |
249 |
Q |
| |
|
||| ||||| |||| ||||||||||| |||||||| |
|
|
| T |
6264339 |
ggttcagagttttgccgctataattcagcaaatgtt |
6264304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 249
Target Start/End: Complemental strand, 5279484 - 5279281
Alignment:
| Q |
46 |
gactacagaggcagtagctttccaaattggcttggcgattgtcatttacccaatttagttactcttgaattgttgggatgtaaactttgttcccagttac |
145 |
Q |
| |
|
||||||||||||| | |||||||| |||||||||| || ||| |||||| ||||||||| | |||||| || ||||| | |||||| |||||| | |
|
|
| T |
5279484 |
gactacagaggcactggctttccacattggcttggggactgttatttactcaatttagtatcccttgaactgaatagatgtggattttgtttccagtttc |
5279385 |
T |
|
| Q |
146 |
catcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggtgcagagatttgtggctataattcatcaaa |
245 |
Q |
| |
|
|| ||||||||||| | | |||||| ||| ||||||| ||||||| || ||||||||||||||||| |||| |||| ||| ||||||||||||||||| |
|
|
| T |
5279384 |
caccacttgggcagcttccctctcttaaggagctttctatttcagaatgtgatggaatagagattatcggtgaagagttttatggctataattcatcaac |
5279285 |
T |
|
| Q |
246 |
tgtt |
249 |
Q |
| |
|
|||| |
|
|
| T |
5279284 |
tgtt |
5279281 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 246
Target Start/End: Complemental strand, 6244073 - 6243942
Alignment:
| Q |
115 |
ttgttgggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattg |
214 |
Q |
| |
|
||||||||||||||||| |||||| |||| ||| | || |||||||| ||||||||||||||||||||||||||||| ||||||||| || |||| |
|
|
| T |
6244073 |
ttgttgggatgtaaactctgttccaagttgccacaaattaagcagttcccatctctcaagaagctttccatttcaggctgtcatggaataggtatcattg |
6243974 |
T |
|
| Q |
215 |
gtgcagagatttgtggctataattcatcaaat |
246 |
Q |
| |
|
|| ||||| |||| ||||||||||||||||| |
|
|
| T |
6243973 |
gttcagagttttgccgctataattcatcaaat |
6243942 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 6244147 - 6244084
Alignment:
| Q |
17 |
atagaaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttgg |
80 |
Q |
| |
|
|||| |||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6244147 |
atagtaacctcgtgaggctcaccatcaatgactacagaggtagtagctttccaaattggcttgg |
6244084 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 249
Target Start/End: Complemental strand, 5262608 - 5262405
Alignment:
| Q |
46 |
gactacagaggcagtagctttccaaattggcttggcgattgtcatttacccaatttagttactcttgaattgttgggatgtaaactttgttcccagttac |
145 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| || ||| |||||| ||| || || | |||||| || ||||| | ||||||||| ||| | |
|
|
| T |
5262608 |
gactacagaggcacaggctttccacattggcttggggactgttatttactcaacttggtatcccttgaactgaatagatgtggattttgttcccggttgc |
5262509 |
T |
|
| Q |
146 |
catcacttgggcagttccactctctcaagaagctttccatttcaggctgcgatggaatagagattattggtgcagagatttgtggctataattcatcaaa |
245 |
Q |
| |
|
|| |||||||| || | | |||||| || ||||||| ||||||| || ||||||||||||| || |||| |||| ||| ||||||||||||||||| |
|
|
| T |
5262508 |
caccacttgggaagcttccctctcttaaagagctttctatttcagaatgttatggaatagagatcatcggtgaagagttttatggctataattcatcaac |
5262409 |
T |
|
| Q |
246 |
tgtt |
249 |
Q |
| |
|
|||| |
|
|
| T |
5262408 |
tgtt |
5262405 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 35141544 - 35141631
Alignment:
| Q |
17 |
atagaaacctcatgaggctaaccatcaaagactacagaggcagtagctttccaaattggcttggcgattgtcatttacccaatttagt |
104 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
35141544 |
atagaaacctcatgaggctcaccatcaatgactacagaggtagtagctttccaaattggcttggggatcatcatttacccaatttagt |
35141631 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1643 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1643
Description:
Target: scaffold1643; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 225
Target Start/End: Complemental strand, 957 - 816
Alignment:
| Q |
84 |
ttgtcatttacccaatttagttactcttgaattgttgggatgtaaactttgttcccagttaccatcacttgggcagttccactctctcaagaagctttcc |
183 |
Q |
| |
|
||||||||||||||| ||||| ||||| || |||| | ||| | | |||||||| || ||| ||||||||||| | | ||||||||||| ||||| |
|
|
| T |
957 |
ttgtcatttacccaacttagtatctcttcaactgttaagctgtggattatgttcccattttccaccacttgggcagcttccttctctcaagaatctttct |
858 |
T |
|
| Q |
184 |
atttcaggctgcgatggaatagagattattggtgcagagatt |
225 |
Q |
| |
|
|||||| || ||||||||| |||| ||||||| ||||||| |
|
|
| T |
857 |
atttcatattgtgatggaataaagatcattggtgaagagatt |
816 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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