View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19823_high_1 (Length: 581)
Name: NF19823_high_1
Description: NF19823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19823_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 102 - 567
Target Start/End: Original strand, 33582896 - 33583366
Alignment:
| Q |
102 |
taatcatataagcaccgtctcttctttaggtcattcacctat----tgatgcttctcagacaggtatacatagttttatttcttgttttattcattcttc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33582896 |
taatcatataagcaccgtctcttctttaggtcattcacctatatattgatgcttctcagacaggtatacatagttttatttcttgttttattcattcttc |
33582995 |
T |
|
| Q |
198 |
atctgattattctctaaaagattcatacataagctatgatcacaattgtaatt-ttttaattgttttacatcattttacaagattaaacctataaatgct |
296 |
Q |
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| T |
33582996 |
atctgattattctctaaaagattgatatataagctatgatcacaattgtaattcttttaattgttttacttcattttacaagattaaacctataaatgct |
33583095 |
T |
|
| Q |
297 |
aaccttccaaatggtttttctattttagtccaccatgctagtaatgttcatttttccccatatttatttcgatcaccaatttttatattcctcagatttc |
396 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33583096 |
aaccttccaaatggtttttctattttagtccatcatgctagtaatgttcattttttcccatatttatttcgatcaccaatttttatattcctcaaatttc |
33583195 |
T |
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| Q |
397 |
aatctcgatctaaaatatgtaattcattatcttcatttgtccagttttccactaagagttctgttatccaggatttgtaatctgggaggacgattggttt |
496 |
Q |
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|| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33583196 |
aaactcgatctaaaatatgtaaatcattatcttgctttgtccagttttccactaagagttctgttatccaggatttgtaatccaggaggacgattggttt |
33583295 |
T |
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| Q |
497 |
gggttaatttagaatggcttatacaggtgatattaattgtggacacgagtacgacattatcagctgatatt |
567 |
Q |
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| T |
33583296 |
gggtgaatttagaatggcttatacagatgatattaattgtggactcgagtacgacattatcagatgatatt |
33583366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 25122857 - 25122913
Alignment:
| Q |
128 |
taggtcattcacctattgatgcttctcagacaggtatacatagttttatttcttgtt |
184 |
Q |
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| T |
25122857 |
taggtcattcacctagtgatgcttctcagataggtatatatagtgttatttcttgtt |
25122913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 259 - 335
Target Start/End: Original strand, 25122987 - 25123063
Alignment:
| Q |
259 |
gttttacatcattttacaagattaaacctataaatgctaaccttccaaatggtttttctattttagtccaccatgct |
335 |
Q |
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| T |
25122987 |
gttttacttcattttacaagattaaacttatacatgttaatcttccaaatggttcttctgttttagttcaacatgct |
25123063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 18475429 - 18475495
Alignment:
| Q |
259 |
gttttacatcattttacaagattaaacctataaatgctaaccttccaaatggtttttctattttagt |
325 |
Q |
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|||||||||||||||| || ||||||||||| |||| ||| ||||||||| ||| ||| ||||||| |
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| T |
18475429 |
gttttacatcattttataaaattaaacctatcaatgttaatcttccaaattgttcatctgttttagt |
18475495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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