View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19823_high_2 (Length: 447)
Name: NF19823_high_2
Description: NF19823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19823_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 7 - 433
Target Start/End: Complemental strand, 3153897 - 3153471
Alignment:
| Q |
7 |
ctaatattaggcttaaatatcgacccaaaaataattctcatctcgtatgtaatgccaatgcatgtcggttgtttttatattagagtttaatatttatact |
106 |
Q |
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| T |
3153897 |
ctaatattaggcttaaatatcgactcaaaaataattctcatctcgtatgtaatgccaatgcatgtcggttgtttctgtattagagtttaatatttatact |
3153798 |
T |
|
| Q |
107 |
ctatcagtgtagataaattttacataaccgtggtttgaaaaagtaacattatgtatgactatgaaaagcatgtttacagattcagtgtataattactaaa |
206 |
Q |
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| T |
3153797 |
ctatcagtgtagataaattttacataaccgtggtttgaaaaagtaacattatgtatgactatgaaaagcatgtttacagattcagtgtataattactaaa |
3153698 |
T |
|
| Q |
207 |
atctacatattaatcggacgattttgcaaaagctaagtataggaactaggaagtcaaaatttaacattaatatttccaacttacagtctcagtatgcttc |
306 |
Q |
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| T |
3153697 |
atctacatattaatcggactattttgcaaaagctaagtataggaactaggaagtcaaaatttaacattaatatttccaacttacagtctcagtatgcttc |
3153598 |
T |
|
| Q |
307 |
tcagaggtgggaacatggtttccaattgatcgagatgggtaaggccttgaactactgcaactgggattaaaaatagaattgtaagagcaatgcaagcaac |
406 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3153597 |
tcagaggtgggaacatggtttctaattgatcgagatgggtaaggccttgaactactgcaactgggattaaaaatagaattgtaagagcaatgcaagcaac |
3153498 |
T |
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| Q |
407 |
aaaaactgccagcctgctgatccatct |
433 |
Q |
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| T |
3153497 |
aaaaactgccagcctgctgatccatct |
3153471 |
T |
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Back To:
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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 433
Target Start/End: Complemental strand, 4007317 - 4007162
Alignment:
| Q |
278 |
atttccaacttacagtctcagtatgcttctcagaggtgggaacatggtttccaattgatcgagatgggtaaggccttgaactactgcaactgggattaaa |
377 |
Q |
| |
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|||| |||||||||||||||||| || | ||| | ||||| | |||||||| || || ||||| ||||| ||||| |||| |||||| ||||||||| |
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| T |
4007317 |
atttacaacttacagtctcagtacgcctttcaaaaacgggaagaacgtttccaactgttcaagatgagtaagaccttgtactattgcaaccgggattaaa |
4007218 |
T |
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| Q |
378 |
aatagaattgtaagagcaatgcaagcaacaaaaactgccagcctgctgatccatct |
433 |
Q |
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|| |||| ||| |||| | | | |||||| ||||| ||||| ||||||||||||| |
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| T |
4007217 |
aacagaactgtgagagtagtatatgcaacataaactaccagcttgctgatccatct |
4007162 |
T |
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