View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19823_high_3 (Length: 389)
Name: NF19823_high_3
Description: NF19823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19823_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 22530827 - 22530456
Alignment:
| Q |
1 |
ttcaatcatcaaaattaacttcaataatgttaaaaatgttttgcatgcaatgcaagaagaaagaaaatacctgataagcaacacgaagtcgtgaaccatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22530827 |
ttcaatcatcaaaattaacttcaataatgttaaaaatgttttgcatgcaatgcaagaagaaagaaaatacctgataagcaacacgaagacgtgaaccatc |
22530728 |
T |
|
| Q |
101 |
ggaaacagcggtatgtaactgattcgaagacaaaggcctcggaagagcgattggatctttggaaacgacgccgtttgggctggtttgcagttcaacggag |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22530727 |
ggaaacagcggtatgtaactgattagaagacaaaggcctcggaagagcgattggatctttggaaacgacgccgtttgggctggtttgcagttcaacggag |
22530628 |
T |
|
| Q |
201 |
tgtgatgtgtcgttttgagaagcgcgaatgcagaggttacggtgtcgttttgggggaaaagtgagattgacggtggggatgggtttaagggagtcggaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22530627 |
tgtgatgtgtcgttttgagaagcgcgaatgcagaggttacggtgtcgttttgggggaaaagtgagattgacggtggggatgggtttaagggagtcggaag |
22530528 |
T |
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| Q |
301 |
gggaagattgacggtggagattgggcggagaatgggagatgattcgtgatgatgccatgaaaatggtttatt |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22530527 |
gggaagattgacggtggagattgggcggagaatgggagatgattcgtgatgatgccatgaaaatggtttatt |
22530456 |
T |
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