View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19823_high_4 (Length: 348)
Name: NF19823_high_4
Description: NF19823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19823_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 335
Target Start/End: Complemental strand, 28522276 - 28521968
Alignment:
| Q |
21 |
aattgattcctttttacttactccatttgtcctaccttataaatgtattaggtctccctaaatatatttaaaaacgtgtgaatgatataaaagtacataa |
120 |
Q |
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| T |
28522276 |
aattgattcctttttacttactccatttgtcctaccttatgaatgtattaggtctccctaaatatatttaaaaacgtgtgaatgatataaaagtacataa |
28522177 |
T |
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| Q |
121 |
ataattaattatgtcaacattcaacacttgtttattccttcaaacaaacaaaaaattgtaaatcacnnnnnnnnatagtcctcctattataattgagtcg |
220 |
Q |
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| T |
28522176 |
ataattaattaggtcaacattcaacacttgtttattcctt----aaaaaaaaaaaatgtaaatcac--ttttttatagtcctcctattataattgtgtcg |
28522083 |
T |
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| Q |
221 |
acatcaatgtgtgatttatttttaaagtctttctttcaactcttattttcaagtaacttttagatcataaaaaagtcagactaaacggtaccatagtcat |
320 |
Q |
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| T |
28522082 |
acatcaatacgtgctttatttttaaagtctttctttcaacttttattttcaagtaacttttagaccgtaataaagtcagactaaacggtaccatagtcat |
28521983 |
T |
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| Q |
321 |
gttttattagccttc |
335 |
Q |
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||||||||||||||| |
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| T |
28521982 |
gttttattagccttc |
28521968 |
T |
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