View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19823_low_5 (Length: 301)
Name: NF19823_low_5
Description: NF19823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19823_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 11849514 - 11849229
Alignment:
| Q |
1 |
agaccaatcatgaaacctatggatccgagacttgatgaaacccctacacatttgtcacaataaattaggagattatgaaaacgtagtggtgactggtgag |
100 |
Q |
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| T |
11849514 |
agaccaatcatgaaacctatggatccgagacttgatgaaacccctacacatttgtcacaataaattaggagattatgaaaacatagtggtgactggtgag |
11849415 |
T |
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| Q |
101 |
tgtaattgagagctgttaattgcaaaactcacactaagtacggagaagtggagaactgcgggtttagacccgcacgtcagcatatcaaatatcccaataa |
200 |
Q |
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| T |
11849414 |
tgtaattgagagctgttaattgcaaaactcacactaagtacggagaagtggagaactgtgggtttagacccgcacgtctgcatatcaaatatcccaataa |
11849315 |
T |
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| Q |
201 |
cattttaccatatgagtggtacttatgggatgcgagtcatgaggtgttaacgtgttttatcaaatagaaagagtatgtgttgttta |
286 |
Q |
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| T |
11849314 |
cattttaccatatgagtggtacttatgggatgcgaatcatgaggtgttaacgtgttttatcaaatagaaagagtatgtgtttttta |
11849229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 11844785 - 11844500
Alignment:
| Q |
1 |
agaccaatcatgaaacctatggatccgagacttgatgaaacccctacacatttgtcacaataaattaggagattatgaaaacgtagtggtgactggtgag |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
11844785 |
agaccaaccatgaaacctatggatccgagacttgatgaaacccctacacatttgtcacagtaaattaggagattatgaaaacatagtggtgactggtgag |
11844686 |
T |
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| Q |
101 |
tgtaattgagagctgttaattgcaaaactcacactaagtacggagaagtggagaactgcgggtttagacccgcacgtcagcatatcaaatatcccaataa |
200 |
Q |
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| T |
11844685 |
tgtaattgagagctgttaattgcaaaactcaccctaagtacggagaagtggagaactgtgggtttagacccgcacgtctgcatatcaaatatcccaataa |
11844586 |
T |
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| Q |
201 |
cattttaccatatgagtggtacttatgggatgcgagtcatgaggtgttaacgtgttttatcaaatagaaagagtatgtgttgttta |
286 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||| |||| |
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| T |
11844585 |
cattttaccatatgagtggtacttatggcatgcgagttatgagtggttaccgtgttttatcaaatagaaagagtatgtgtttttta |
11844500 |
T |
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