View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19823_low_6 (Length: 277)
Name: NF19823_low_6
Description: NF19823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19823_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 16281947 - 16281700
Alignment:
| Q |
11 |
cagagagtaaactgaaaattgaaactaacctcgtgattttgaaattcagaaattacactacattagaatctcaatttagaaattaaaactaacgttacaa |
110 |
Q |
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| T |
16281947 |
cagaaagtaaactgaaaattgaaactaaactcgtgattttgaaattccgaaattacactacattagaatctcaatttagaaattaaaactaacgttacaa |
16281848 |
T |
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| Q |
111 |
ttttaaaaatgaaagtaacacatagaatctcaattttcagagcgaaatgaaaatctaacagtaacatacgaagatcaacacaaaatatacgcaaatatca |
210 |
Q |
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| T |
16281847 |
ttttaaaaatgaaagtaacacatagaatctcaattttcagagcgaaatgaaaatctaacagtaacatacgaaaatcaacacaaaatatacgcaaagatca |
16281748 |
T |
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| Q |
211 |
aaacgcatcaactcttcattggagaagcaaaacgtgaactcataaact |
258 |
Q |
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| T |
16281747 |
aaacgcatcaactcttcattggagaagcaaaacgtgaactcataaact |
16281700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 16282452 - 16282404
Alignment:
| Q |
128 |
acacatagaatctcaattttcagagcgaaatgaaaatctaacagtaaca |
176 |
Q |
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| T |
16282452 |
acacatagaatctcaattttcagagtgaaatgtaatgctaacagtaaca |
16282404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 16283271 - 16283209
Alignment:
| Q |
131 |
catagaatctcaattttcagagcgaaatgaaaatctaacagtaacatacgaagatcaacacaa |
193 |
Q |
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| T |
16283271 |
cataaaatctcaattttcagagcgaaatgaaatgctaacaataccgaacgaaaatcaacacaa |
16283209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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