View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19823_low_8 (Length: 243)
Name: NF19823_low_8
Description: NF19823
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19823_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 38905095 - 38904877
Alignment:
| Q |
10 |
gtagataatactgacaatgcagcactggtaacatgttgtactgctcgaaactgcgtgtatctaagataaccttcattcacactacaaaggaaaacgctag |
109 |
Q |
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| T |
38905095 |
gtagataagactgacaatgcagcactggtaacatgttgtactgctcgaaactgcgtgtatctaagataaccttcattcacactacaaaggaaaacgctag |
38904996 |
T |
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| Q |
110 |
aaatttgagtaattgaacaaccttatctaaactctaaacaaagccgtcactacgggattgtttgaattgacttaattgagcttatctacata----cata |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38904995 |
aaatttgagtaattgaacaaccttatctaaactctaaacaaagccgtcactacgggattgtttgaattgacttaattgagcttatctacatacatacata |
38904896 |
T |
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| Q |
206 |
agcacttataagataaaag |
224 |
Q |
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| T |
38904895 |
agcacttataagataaaag |
38904877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 1431277 - 1431309
Alignment:
| Q |
169 |
gtttgaattgacttaattgagcttatctacata |
201 |
Q |
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| T |
1431277 |
gtttgaattgacttatttgagcttatctacata |
1431309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 18525160 - 18525203
Alignment:
| Q |
168 |
tgtttgaattgacttaattgagcttatctacatacataagcact |
211 |
Q |
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| T |
18525160 |
tgtttgaattgacttatttgagcttatctacagacataaacact |
18525203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 44438760 - 44438804
Alignment:
| Q |
168 |
tgtttgaattgacttaattgagcttatctacatacataagcactt |
212 |
Q |
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| T |
44438760 |
tgtttgaattgactgatttgagcttatctacagacataatcactt |
44438804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 11059648 - 11059698
Alignment:
| Q |
168 |
tgtttgaattgacttaattgagcttatctacatacataagcacttataaga |
218 |
Q |
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| T |
11059648 |
tgtttgaattgacttatgtgagcttatctaatgacataagcacttataaga |
11059698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 41057304 - 41057262
Alignment:
| Q |
170 |
tttgaattgacttaattgagcttatctacatacataagcactt |
212 |
Q |
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||||||||| |||| |||||||||||||||| ||||||||||| |
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| T |
41057304 |
tttgaattggcttatttgagcttatctacatgcataagcactt |
41057262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 6292644 - 6292599
Alignment:
| Q |
167 |
ttgtttgaattgacttaattgagcttatctacatacataagcactt |
212 |
Q |
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||||||| ||||||||| |||||||||||||| |||||||||||| |
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| T |
6292644 |
ttgtttggattgacttatttgagcttatctactgacataagcactt |
6292599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 33961832 - 33961788
Alignment:
| Q |
170 |
tttgaattgacttaattgagcttatctacatacataagcacttat |
214 |
Q |
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|||||||||| ||| |||||||||||||| |||||||||||||| |
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| T |
33961832 |
tttgaattgaattatttgagcttatctacggacataagcacttat |
33961788 |
T |
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