View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19824_high_1 (Length: 777)

Name: NF19824_high_1
Description: NF19824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19824_high_1
NF19824_high_1
[»] chr1 (1 HSPs)
chr1 (12-762)||(26414331-26415080)
[»] chr2 (9 HSPs)
chr2 (128-296)||(27986404-27986572)
chr2 (128-296)||(28072936-28073104)
chr2 (429-531)||(27985896-27985996)
chr2 (429-531)||(28072427-28072527)
chr2 (414-520)||(28179918-28180022)
chr2 (414-522)||(28153427-28153534)
chr2 (417-504)||(28172170-28172256)
chr2 (265-298)||(27995121-27995154)
chr2 (265-298)||(28081655-28081688)
[»] chr3 (1 HSPs)
chr3 (414-531)||(24747438-24747553)


Alignment Details
Target: chr1 (Bit Score: 639; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 12 - 762
Target Start/End: Original strand, 26414331 - 26415080
Alignment:
Q  12 caaaggtagtgataggaaaagctataaaaataataataaaacgataacctgtgagcattcatcattttcagttttgttcatcattttggactctagtgta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26414331 caaaggtagtgataggaaaagctataaaaataataataaaacgataacctgtgagcattcatcattttcagttttgttcatcattttggactctggtgta 26414430  T
Q  112 gttcatgccccactggcagaacacaaccatttcttgtgaataataaaagtaattcaacgcagtgagtcgccagttctaacacagggctagaatgtataac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  26414431 gttcatgccccactggcagaacacaaccatttcttgtgaataataaaagtaattcaaagcagtgagtcaccagttctaacacagggctagaatgtataac 26414530  T
Q  212 gtagtattcaaatttgagttatgaattgttgaaattttaatgagtcatcaaggttgaaatagatctaactcttataagtagaatggctagaaaatgaaat 311  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26414531 gtagtattcaaatttgagttatgaattgttgaaattttaatgagccatcaaggttgaaatagatctaactcttataagtagaatggctagaaaatgaaat 26414630  T
Q  312 catacaaatcctcctagtggcttgcacacctcaaatctagcnnnnnnnnnnnnnngaagaatcaattctagctttttctattttcgagcaaatacacaac 411  Q
    |||||||||||||||||||||||||||||||||||||||||              ||| |||||| |||||| |||||||||||||||||||||||||||    
T  26414631 catacaaatcctcctagtggcttgcacacctcaaatctagctttttcttttttttgaaaaatcaaatctagccttttctattttcgagcaaatacacaac 26414730  T
Q  412 caaagtagaaattaaatactaaaactaagctttaataagaggtaccataatatgctatagcccatataattcacacattatttcaagtacattgtctaac 511  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  26414731 caaagtaaaaattaaatactaaaactaagctttaataagaggtaccataatatgctagagcccata--attcacacattatttcaagtacattgtctaac 26414828  T
Q  512 caatcacactaaatatagcattatttcaattgttattgtacataggaccatttgaattaacaaaatttggaagtaccaaacaagattgacttagttcaa- 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  26414829 caatcacactaaatatagcattatttcaattgttattgtacataggaccatttgaattaacaaaatttggaagtaccaaacaagattgacttagtccaag 26414928  T
Q  611 catgttagttttgtttgtaagagaatgttcataccgttactccttcagatacttgcaccgataaatgcatccaagagagcatgttagtcgtcctaaacag 710  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26414929 catgttagtttcgtttgtaagagaatgttcatactgttactccttcagatacttgcaccgataaatgcatccaagagagcatgttaatcgtcctaaacag 26415028  T
Q  711 aattgcctgtattaggttgcttctgatggttcgttgctggcagtgagagatg 762  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26415029 aattgcctgtattaggttgcttctgatggttcgttgctggcagtgagagatg 26415080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 4e-71; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 128 - 296
Target Start/End: Complemental strand, 27986572 - 27986404
Alignment:
Q  128 cagaacacaaccatttcttgtgaataataaaagtaattcaacgcagtgagtcgccagttctaacacagggctagaatgtataacgtagtattcaaatttg 227  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  27986572 cagaacacaaccatttattgtgaataataaaagtaattcaacgcagtgaatcaccagttctaacacagagctagaatggataacgtagtattcaaatttg 27986473  T
Q  228 agttatgaattgttgaaattttaatgagtcatcaaggttgaaatagatctaactcttataagtagaatg 296  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  27986472 agttatgaattgttgaaattgtaatgagtcatcaaggttgaaatagatctaacacttgtaagtagaatg 27986404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 128 - 296
Target Start/End: Complemental strand, 28073104 - 28072936
Alignment:
Q  128 cagaacacaaccatttcttgtgaataataaaagtaattcaacgcagtgagtcgccagttctaacacagggctagaatgtataacgtagtattcaaatttg 227  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  28073104 cagaacacaaccatttattgtgaataataaaagtaattcaacgcagtgaatcaccagttctaacacagagctagaatggataacgtagtattcaaatttg 28073005  T
Q  228 agttatgaattgttgaaattttaatgagtcatcaaggttgaaatagatctaactcttataagtagaatg 296  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  28073004 agttatgaattgttgaaattgtaatgagtcatcaaggttgaaatagatctaacacttgtaagtagaatg 28072936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 429 - 531
Target Start/End: Complemental strand, 27985996 - 27985896
Alignment:
Q  429 actaaaactaagctttaataagaggtaccataatatgctatagcccatataattcacacattatttcaagtacattgtctaaccaatcacactaaatata 528  Q
    |||||||||||||||||||||||| || ||| ||||||| |||||||||  ||| | ||||||||||||||||||||||| |||||||||||||||||||    
T  27985996 actaaaactaagctttaataagagatatcatcatatgctttagcccata--atttatacattatttcaagtacattgtctgaccaatcacactaaatata 27985899  T
Q  529 gca 531  Q
    |||    
T  27985898 gca 27985896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 429 - 531
Target Start/End: Complemental strand, 28072527 - 28072427
Alignment:
Q  429 actaaaactaagctttaataagaggtaccataatatgctatagcccatataattcacacattatttcaagtacattgtctaaccaatcacactaaatata 528  Q
    |||||||||||||||||||||||| || ||| ||||||| |||||||||  ||| | ||||||||||||||||||||||| |||||||||||||||||||    
T  28072527 actaaaactaagctttaataagagatatcatcatatgctttagcccata--atttatacattatttcaagtacattgtctgaccaatcacactaaatata 28072430  T
Q  529 gca 531  Q
    |||    
T  28072429 gca 28072427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 414 - 520
Target Start/End: Original strand, 28179918 - 28180022
Alignment:
Q  414 aagtagaaattaaatactaaaactaagctttaataagaggtaccataatatgctatagcccatataattcacacattatttcaagtacattgtctaacca 513  Q
    |||| ||||| |||||||||||||||||||  ||||||  |||||| |||||| ||||||||||  ||||||||||||||||||||||||||| | ||||    
T  28179918 aagtcgaaatcaaatactaaaactaagcttcgataagaattaccatcatatgcaatagcccata--attcacacattatttcaagtacattgtatgacca 28180015  T
Q  514 atcacac 520  Q
    |||||||    
T  28180016 atcacac 28180022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 414 - 522
Target Start/End: Original strand, 28153427 - 28153534
Alignment:
Q  414 aagtagaaattaaatactaaaactaagctttaataagagg-taccataatatgctatagcccatataattcacacattatttcaagtacattgtctaacc 512  Q
    |||||||||| ||||||||||| ||||||| |||||||   |||||| |||| ||||||||||||  |||||||||||||||| |||||||||||| |||    
T  28153427 aagtagaaatcaaatactaaaattaagcttcaataagaaactaccatcatattctatagcccata--attcacacattatttctagtacattgtctgacc 28153524  T
Q  513 aatcacacta 522  Q
    ||||||||||    
T  28153525 aatcacacta 28153534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 417 - 504
Target Start/End: Original strand, 28172170 - 28172256
Alignment:
Q  417 tagaaattaaatactaaaactaagctttaataagaggtaccataatatgctatagcccatataattcacacattatttcaagtacatt 504  Q
    ||||||| |||||||||||||| ||||||||||||| | |||| |||||||||||| |  ||||||||||||||||||||||||||||    
T  28172170 tagaaatcaaatactaaaactatgctttaataagagatgccatcatatgctatagctc-cataattcacacattatttcaagtacatt 28172256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 298
Target Start/End: Complemental strand, 27995154 - 27995121
Alignment:
Q  265 ttgaaatagatctaactcttataagtagaatggc 298  Q
    |||||| |||||||||||||||||||||||||||    
T  27995154 ttgaaacagatctaactcttataagtagaatggc 27995121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 265 - 298
Target Start/End: Complemental strand, 28081688 - 28081655
Alignment:
Q  265 ttgaaatagatctaactcttataagtagaatggc 298  Q
    |||||| |||||||||||||||||||||||||||    
T  28081688 ttgaaacagatctaactcttataagtagaatggc 28081655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 414 - 531
Target Start/End: Complemental strand, 24747553 - 24747438
Alignment:
Q  414 aagtagaaattaaatactaaaactaagctttaataagaggtaccataatatgctatagcccatataattcacacattatttcaagtacattgtctaacca 513  Q
    |||||||||| |||||||||||||||||||| ||||||| || ||| |||||||||||||||||  ||||||||||||||||||||||||||||  ||||    
T  24747553 aagtagaaatcaaatactaaaactaagctttgataagagatatcatcatatgctatagcccata--attcacacattatttcaagtacattgtcggacca 24747456  T
Q  514 atcacactaaatatagca 531  Q
    ||||||||||||||||||    
T  24747455 atcacactaaatatagca 24747438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University