View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19824_high_4 (Length: 476)
Name: NF19824_high_4
Description: NF19824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19824_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 457
Target Start/End: Original strand, 26468057 - 26468503
Alignment:
| Q |
11 |
aagaatatttttataattgtttctatttataaggactcctttatcttagagtgaacaatgttccacaagataaacacaccctcaacactactatatatga |
110 |
Q |
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| T |
26468057 |
aagaatatttttataattgtttctatttataaggactcctttatcttagagtgaacaatgttccacaagacaaacacatcctcaacactactatatatga |
26468156 |
T |
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| Q |
111 |
atcccttgttcgatttcaatcacaaaatttcagattattctcaaatgattggttcctctcttggtcatcaataatgcattattgaattaaattgtgttga |
210 |
Q |
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| T |
26468157 |
atcccttgttcgatttcaatcacaaaatttcatattattctcaaatgattggttcctctcttggtcatcaagaatgcattattgaattaaattgtgtcga |
26468256 |
T |
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| Q |
211 |
caataggtgatatgcagtgcaacaaagtccatggattcaattcacgttgctgtaatttcaaatctcaattttgttcatgatatgataattcttaccaatt |
310 |
Q |
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| T |
26468257 |
caataggtgatatgcagtgcaacaaagtccatggattcaattcacgtcgctgtaatttcaaatctcaattttgttcatgatatgataattcttaccaatt |
26468356 |
T |
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| Q |
311 |
tttgaaatgtatgcataacgtttatttaaataatgactttatctcaattgatgacatgaccactaatgatgagttttacgtggttacatttaaatcagaa |
410 |
Q |
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| T |
26468357 |
tttggaatgtatgcataacgtttatttaaataatgactttatctcaatcgatgacatgaccactaatgatgagttttacgtggtcacatttaaatcagaa |
26468456 |
T |
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| Q |
411 |
agttataaatcgagaaaatgcgtaaaactttctttaatggctactct |
457 |
Q |
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| T |
26468457 |
aggtataaatcgagaaaatacgtaaaactttttttaaaggctactct |
26468503 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 357
Target Start/End: Original strand, 6348494 - 6348582
Alignment:
| Q |
270 |
aaatctcaattttgttcatgatatgataattcttaccaattt-ttgaaatgtatgcataacgtttatttaaataatgactttatctcaa |
357 |
Q |
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| T |
6348494 |
aaatctcaatgttattcatgatatgaaaatacttgccaaataattgaaaggtatggataaggttgattttgataatgactttatctcaa |
6348582 |
T |
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