View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19824_low_1 (Length: 1036)
Name: NF19824_low_1
Description: NF19824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19824_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 425 - 1023
Target Start/End: Complemental strand, 8355267 - 8354629
Alignment:
| Q |
425 |
tatcatgaacagaggaacaaagttgataatatttaggatatcaaattacccaacaggaacatagagggattcagacaatcttaattgttcgtcttgattc |
524 |
Q |
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| T |
8355267 |
tatcatgaacagaggaacaaagttgatattatttaggatatcaaattacccaacaggaacatagagggattcagacaatcttaattgttcgtcttgattc |
8355168 |
T |
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| Q |
525 |
taaatttaagttttaatttactttcaatttgtaaaccaacttggaatgcaaacccctgaaatttatatttgtatgacttataaaacatataaaatcatcc |
624 |
Q |
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| T |
8355167 |
taaatttaagttttaatttactttcaatttgtaaaccaacttggaatgcaaacccctgaaatttatatttatatgacttataaaacatataaaatcatcc |
8355068 |
T |
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| Q |
625 |
tttttgag------------------tactataagaaagggaccaaaaccgatagtttttaaaatgaatgaccaagtactccattattaaaggagcaatc |
706 |
Q |
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| T |
8355067 |
tttttgagtttaaaaaaaaataaaaatactataagaaagggaccaaaaccgatagtttttaaaatgaatgaccaagtactccattattaaaggaccaatc |
8354968 |
T |
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| Q |
707 |
cgagta--attca-----aggataggatagataagtaatcttattaaaatagatagactagggtgtatttttgaactgagtctcttacaacaacaaaaac |
799 |
Q |
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| T |
8354967 |
cgagtaatattcaaggataggataggatagataagtaatcttattaaaatagatagactagggtgtatttttgaactgag--tcttacaacaacaaaaac |
8354870 |
T |
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| Q |
800 |
aaaacagttatccatg------------atatatctatcattcccaaagcaaaaggtt-----ttaggttgcaggggaagcattagcaatgtcaatgaca |
882 |
Q |
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| T |
8354869 |
aaaacagttatccatgatatatatatatatatatatatcattcccaaagcaaagggttttaggttaggttgcaggggaagcattagcaatgtcaatgaca |
8354770 |
T |
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| Q |
883 |
aaacggtaacgaacatcattcttcacaagacgctgaaaagcttcattgattgtatcagctttgattaattcaatgtcacatgtgatattatgcttcccac |
982 |
Q |
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| T |
8354769 |
aaacggtaacgaacatcattcttcaaaagacgctgaaaagcttcattgattgtatcagctttgattaattcaatgtcacatgtgatattatgcttcccac |
8354670 |
T |
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| Q |
983 |
aaacatccaacatttcttgagtctcttttattcctcctatg |
1023 |
Q |
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| T |
8354669 |
aaacatccaacatttcttgagtctcttttattcctcctatg |
8354629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 126 - 346
Target Start/End: Complemental strand, 8355477 - 8355265
Alignment:
| Q |
126 |
atatatgagtcctctttaatgcaatctataaatatgttttgtttattcattatcttgtgttgaatgatttttattgtttgatcaactctaaactaatttt |
225 |
Q |
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| T |
8355477 |
atatatgagtcctctttaatgcaatctataaatatgttt-----attcattatcttgtgttgaatgatttttattgtttgatcaactgtaaactaatttt |
8355383 |
T |
|
| Q |
226 |
aaaatatatacaaatcactattaacactaggttttgtaactagaactagatataatgctctctgattaatttatctagacata-gaaattaactagcgtc |
324 |
Q |
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| T |
8355382 |
aaaata----caaatcacaattaacactaggttttgtaactagaactagatataatgctctctgattaatttatctagacataggaaattaactagcgtc |
8355287 |
T |
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| Q |
325 |
aaactcttgataatactagtat |
346 |
Q |
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| T |
8355286 |
aaactcttgataatactagtat |
8355265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 8355641 - 8355524
Alignment:
| Q |
14 |
caattttcaacccttggcaacaagattgaaaactcgtcactctatttgcatgtattactcattagattatgattgaataataaacatctatggtattgtt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8355641 |
caattttcaacccttggcaacaagattgaaaactcgtcactctatttgcatgtattactcattagattatgattgaataataaacatctatggtactgtt |
8355542 |
T |
|
| Q |
114 |
taaaaccatgtgatatat |
131 |
Q |
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|||||||||||||||||| |
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| T |
8355541 |
taaaaccatgtgatatat |
8355524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 46801027 - 46800960
Alignment:
| Q |
243 |
ctattaacactaggttttgtaactagaactagatataatgctctctgattaatttatctagacataga |
310 |
Q |
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| T |
46801027 |
ctattaacattatgttttgtaacttaaaataggtataatgttatctaattaatttatctagacataga |
46800960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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