View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19824_low_10 (Length: 336)
Name: NF19824_low_10
Description: NF19824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19824_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 5 - 318
Target Start/End: Complemental strand, 3659118 - 3658805
Alignment:
| Q |
5 |
acaaaagggaaaatgtttataatcgatagagttcacatgataatcgcggggtcaaaacaacttgcaatggagttaacttaggcaaggtaatacccaaccc |
104 |
Q |
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| T |
3659118 |
acaaaagggaaaatgtttataatcgatagagttcacatgataatcgcggggtcaaaacaacttgcaatggagttaacttaggcaaggtaatacccaaccc |
3659019 |
T |
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| Q |
105 |
ttctctcatatcaacaacttcatccattggcacttccaaatcaaacccatgaagtaaacgagcaagtgtaatgagaataacttgtgtagcaaacaacgat |
204 |
Q |
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| T |
3659018 |
ttctctcatatcaacaacttcatccattggcacttccaaatcaaacccatgaagtaaacgagcaagtgtaatgagaataacttgtgtagcaaacaacgat |
3658919 |
T |
|
| Q |
205 |
ccaggacaagctcttctccctaatccaaaaggaaggtactcaaaatggtgactttcatgatcaatttctccattctcattaataaacctttcaggtaaaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3658918 |
ccaggacaagctcttctccctaatccaaaaggaaggtactcaaaatggtgactttcatgatcaatttctccattctcattaataaacctttcaggtaaaa |
3658819 |
T |
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| Q |
305 |
acttttcaggctct |
318 |
Q |
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|||||||||||||| |
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| T |
3658818 |
acttttcaggctct |
3658805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 29 - 318
Target Start/End: Complemental strand, 7843348 - 7843059
Alignment:
| Q |
29 |
gatagagttcacatgataatcgcggggtcaaaacaacttgcaatggagttaacttaggcaaggtaatacccaacccttctctcatatcaacaacttcatc |
128 |
Q |
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| T |
7843348 |
gatagagttcaaagggtaatcgtggggtcaaaacaacttgcaatggagttaacttaggtaaagttattcccaaaccttctctcatatcaacaacttcatc |
7843249 |
T |
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| Q |
129 |
cattggcacttccaaatcaaacccatgaagtaaacgagcaagtgtaatgagaataacttgtgtagcaaacaacgatccaggacaagctcttctccctaat |
228 |
Q |
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|||||||||||||||||||||||||||||| | || ||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7843248 |
cattggcacttccaaatcaaacccatgaagaagacatgcaagtgtaatgagactattttgtgtagcaaacaaagatccaggacaagctcttctccctaat |
7843149 |
T |
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| Q |
229 |
ccaaaaggaaggtactcaaaatggtgactttcatgatcaatttctccattctcattaataaacctttcaggtaaaaacttttcaggctct |
318 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7843148 |
ccaaaaggaaggtactcaaaatgatgactttcatgatcaatttctccattctcattaataaacctttcaggtaaaaacttttcaggctct |
7843059 |
T |
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