View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19824_low_11 (Length: 321)

Name: NF19824_low_11
Description: NF19824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19824_low_11
NF19824_low_11
[»] chr1 (1 HSPs)
chr1 (12-307)||(46840241-46840534)


Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 12 - 307
Target Start/End: Original strand, 46840241 - 46840534
Alignment:
Q  12 atgaatagcaatgaaaactgtgcttattttgtttgaacttcttttgggactaaaagtgaattttgataacagtatgatggtggtgttgaatgtatcaaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46840241 atgaatagcaatgaaaactgtgcttattttgtttgaacttcttttgggactaaaagtgaattttgataacagtatgatggtggtgttgaatgtatcaaat 46840340  T
Q  112 tcttgattagtcgaggtagcgtcaatcttcaattgtagaactggtagtttgccctttgtgtacttagacctaccaattagtggtgattcgcggcgtttac 211  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46840341 tcttgattagtcgaggtag--tcaatcttcaattgtagaactggtagtttgccctttgtgtacttggacctaccaattagtggtgattcgcggcgtttac 46840438  T
Q  212 agttttggtatcccttgattgatcggattaaaaagagactatcatcgtggaaaagtagacatttatctacaaggggtcattttgtgttgttgaaat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46840439 agttttggtatcccttgattgatcggattaaaaagagactatcatcgtggaaaagtagacatttatctacaaggggtcattttgtgttgttgaaat 46840534  T

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