View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19824_low_13 (Length: 299)
Name: NF19824_low_13
Description: NF19824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19824_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 89 - 288
Target Start/End: Complemental strand, 41718671 - 41718472
Alignment:
| Q |
89 |
attgtttgcggcagtgagtactcaatgcagctgaatgcttctcggatcaaagttcttcaagctcaagatgacattgttaattcaatgaaagaagttactg |
188 |
Q |
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| T |
41718671 |
attgtttgcggcagtgagtactcaatgcagctgaatgcttctcggatcaatgttcttcaagctcaagatgacattgttaattcaatgaaagaagttactg |
41718572 |
T |
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| Q |
189 |
ccaaggaacttttgaatgtgagccgtcatcacctggttgaagatattttacatgtgggtaatcatgagtacagaaaccttctaaaaggtctcattgttca |
288 |
Q |
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| T |
41718571 |
ccaaggaacttttgaatgtgagccgtcatcacctggttgaagatattttacatgtgggcaatcatgagtacagaaaccttctaaaaggtctcattgttca |
41718472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 41718801 - 41718724
Alignment:
| Q |
17 |
aaatatgatgagtggaaccannnnnnngtgaagcttaacttgtttcatgatgtgaatattgtgcatttctgtattgtt |
94 |
Q |
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| T |
41718801 |
aaatatgatgagtggaaccatttttttgtgaagcttaatttgtttcatgatgtgaatattgtgcatttctgtattgtt |
41718724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 2419467 - 2419596
Alignment:
| Q |
90 |
ttgtttgcggcagtgagtactcaatgcagctgaatgcttctcggatcaaagttcttcaagctcaagatgacattgttaattcaatgaaagaagttactgc |
189 |
Q |
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||||||| |||| |||||||| |||||| |||||||||| ||| | || ||||||||||| ||||||||| | |||||| ||||||||| | | || |
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| T |
2419467 |
ttgtttgttgcagcgagtactctatgcagttgaatgcttcacggttgaaggttcttcaagcccaagatgacgtggttaataaaatgaaagagtctgccgc |
2419566 |
T |
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| Q |
190 |
caaggaacttttgaatgtgagccgtcatca |
219 |
Q |
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| T |
2419567 |
caaggaactcttgaatgtgagtcgtgatca |
2419596 |
T |
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