View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19824_low_16 (Length: 251)
Name: NF19824_low_16
Description: NF19824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19824_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 28735927 - 28736149
Alignment:
| Q |
14 |
gaaaatcaacccgaacaaagttgttataacaatttcgtaaaattgaaacggactattattggttcgttctgaatcgatctagacttatataaaagtacaa |
113 |
Q |
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| T |
28735927 |
gaaaatcaacccgaacaaagttgttataacaatttcgtaaaattgaaactgactattattggttcgttctgaatcgatctagacttatataaaagtacaa |
28736026 |
T |
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| Q |
114 |
ttgatgcaccaaatgtgtttccgaaccaaaaccaccttaatagatttgaaatataccttttcaatccgaactgattctttgtgaacaacaacctaccaaa |
213 |
Q |
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| T |
28736027 |
ttgatgcatcaaatgtgtttccgaaccaaaaccaccttaatagatttgaaatataccttttcaatccgaactgattctttgggaacaacaacctatgaaa |
28736126 |
T |
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| Q |
214 |
tttatgttataaatggatattag |
236 |
Q |
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| T |
28736127 |
tttatgttataaacggatattag |
28736149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 28712762 - 28712976
Alignment:
| Q |
22 |
acccgaacaaagttgttataacaatttcgtaaaattgaaacggactattattggttcgttctgaatcgatctagacttatataaaagtacaattgatgca |
121 |
Q |
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| T |
28712762 |
acccgaacaaaattgttatgacggtttggtaaaattgaacccaactgttattgtttcttcttgaattgaactgaacttgtataaaagttggatccatgca |
28712861 |
T |
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| Q |
122 |
ccaaat--gtgtttccgaaccaaaaccaccttaatagatttgaaatataccttttcaatccgaactgattctttgtgaacaacaacctaccaaatttatg |
219 |
Q |
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| T |
28712862 |
ccaattacgtgtttccgaaccaaaactactttaatagatttgaaatgtacttgtttgatcccaactaattctttgtgaacaataatgtgccaaatttata |
28712961 |
T |
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| Q |
220 |
ttataaatggatatt |
234 |
Q |
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|||| |||||||||| |
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| T |
28712962 |
ttattaatggatatt |
28712976 |
T |
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