View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19824_low_3 (Length: 551)
Name: NF19824_low_3
Description: NF19824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19824_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 43598394 - 43598644
Alignment:
| Q |
16 |
aaatctatcctcacgtcacatattagcatgactttgcaattaaggtaatgttttgaagtggtaaatttcataagtctgttatgaagtaggaaaattgcat |
115 |
Q |
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| T |
43598394 |
aaatctatcctcacgtcacatattagcatgactttgcaattaaggtaatgttttgaagtggtaaatttcataggtctgttatgaagtaggaaaattgcat |
43598493 |
T |
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| Q |
116 |
gtattacacttgaataaatgctttttaccttattgagaaaatgaattgacccctcttaatcatctttcgatgaaacgaggctgctgtgttttttctgctg |
215 |
Q |
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| T |
43598494 |
gtattacacttgaataaatgctttttaccttattgagaaaatgaattgacccctcttaatcatctttcgatgaaacaaggctgctgtgttttttctgctg |
43598593 |
T |
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| Q |
216 |
ctggcctgagtgttttctctgtgcaggggggtgctgacagcatttggggcc |
266 |
Q |
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| T |
43598594 |
ctggtctgagtgttttctctgtgcaggggggtgctgacagcatttggggcc |
43598644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 332 - 548
Target Start/End: Original strand, 43598714 - 43598930
Alignment:
| Q |
332 |
aggccattgaggtgtttgagtagcagcagtttcagacctgttatttatcattcaaattttacatattaagaaataagtgcgacgagtaattgtattgata |
431 |
Q |
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| T |
43598714 |
aggccattgaggtgtttgaatagcagcagtttcagacctgttatttatcattcaaattttacatattaagaaataagtgcgacgagtaattgtattgata |
43598813 |
T |
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| Q |
432 |
agtcacatgagtacaagataatttgagacacacttaagtattgaactagtcacgctatttgtctaagaaatgtttttacaaaagagcacactttagagtt |
531 |
Q |
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| T |
43598814 |
agtcacatgaatacaagataatttgagacacacttaagtactgaactagtcacactatttgtctaagaaatgtttttacaaaagagcacactttagagtt |
43598913 |
T |
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| Q |
532 |
gaaccttcttctctctc |
548 |
Q |
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| T |
43598914 |
gaaccttcttttctctc |
43598930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 418 - 498
Target Start/End: Complemental strand, 27165062 - 27164982
Alignment:
| Q |
418 |
taattgtattgataagtcacatgagtacaagataatttgagacacacttaagtattgaactagtcacgctatttgtctaag |
498 |
Q |
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| T |
27165062 |
taattttattgataagtcacatgagtacaagataacttgatgcacactcaagtacggaactagtcacactatttgtctaag |
27164982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 34623551 - 34623723
Alignment:
| Q |
16 |
aaatctatcctcacgtcacatattagcatgac-tttgcaattaaggtaatgttttgaagtggtaaatttcataagt----ctgttatgaagtaggaaaat |
110 |
Q |
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| T |
34623551 |
aaatctatcctcacataacatattaacaataggtttgtaattgaggtaatgttttgaaatggtaacttccatacatagggctgttttgaagtaggaaatt |
34623650 |
T |
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| Q |
111 |
tgcatgtattacactt-gaataaatgctttttaccttattgagaaaatgaattgacccctcttaatcatcttt |
182 |
Q |
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| T |
34623651 |
tgcatgcacttctttttgaataaatgctttttactttattgagaaaatgaattgacccttcttaattatcttt |
34623723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 31199163 - 31199105
Alignment:
| Q |
206 |
ttttctgctgctggcctgagtgttttctctgtgcaggggggtgctgacagcatttggggcc |
266 |
Q |
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| T |
31199163 |
ttttctgctgctggtgtgagt-ttttctatgtgtaggggg-tgctgacagcatttggggcc |
31199105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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