View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19824_low_4 (Length: 541)
Name: NF19824_low_4
Description: NF19824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19824_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Complemental strand, 18583700 - 18583193
Alignment:
| Q |
18 |
cataggggccaatacgaagcacagcaaaaagtccttcatcttgaatagttttgagaaatctaatgagatcgttattgccactaaaatcatactcacgacg |
117 |
Q |
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| T |
18583700 |
cataggggccaatacgaagcacagcaaaaagtccttcatcttgaatagttttgagaaatctaatgagatcgttattgccactaaaatcatactcacgacg |
18583601 |
T |
|
| Q |
118 |
aattggttcatgtgcattccaaaaaacatatgtttcaattgcatccaatccaccttcttttgctctcttaatcaaatcaggccacatctaatataaaaca |
217 |
Q |
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| T |
18583600 |
aattggttcatgtgcattccaaaaaacatatgtttcaattgcatccaatccaccttcttttgctttcttaatcaaatcaggccacatctaatataaaaca |
18583501 |
T |
|
| Q |
218 |
aataaaatacacatttagcatataat----taatggagaaacatgtatttaggtcnnnnnnnnnnnnntaatattaattacttacttgaggtgtgcttct |
313 |
Q |
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| T |
18583500 |
aataaaatacacatttagcatataattaattaatggagtaacatgtatttaggtc-aaaaagaaaaaataatattaattacttacttgaggtgtgcttct |
18583402 |
T |
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| Q |
314 |
aggataatggattgatccagaaataagaacccttcttttgccatcaattttgatggctcttccatcatgagaaacttcaacagcataaattccacataaa |
413 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |
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| T |
18583401 |
aggatagtggattgatccagaaataagaacccttcttttgccatcgattttgatggctcttccatcatgagaaacttcaacagcataagttccatataga |
18583302 |
T |
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| Q |
414 |
gcaaggaaaatataacaaaggaataagggaaaagcaaataatcttagagaagccattttcggttgtgaattattcagtgtctttcagaatgaagcaagtg |
513 |
Q |
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| T |
18583301 |
gcaaggaaaatatagcaaaggaaaaaaggaaaaacaaa-acactt--agaagccattttcgtttgtgaattattcagtgtgtttgagaatgaagcaagtg |
18583205 |
T |
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| Q |
514 |
accttatatagt |
525 |
Q |
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| T |
18583204 |
accttatatagt |
18583193 |
T |
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