View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19824_low_7 (Length: 460)
Name: NF19824_low_7
Description: NF19824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19824_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 41718497 - 41718041
Alignment:
| Q |
1 |
aaccttctaaa-ggtctcattgttcaggtcagttaacatttaaatattttacacctaattatcgtttgatcttgcattttgccaagtatctttatcattt |
99 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718497 |
aaccttctaaaaggtctcattgttcaggtcagttaacatttaaatattttacacctaattatcgtttgatcttgcattttgccaagtatctttatcattt |
41718398 |
T |
|
| Q |
100 |
gtagattcttgattacacttactgatagtgttgctgttatttacttactgtgttccaattttatactatttgtagattctcgtttgatcttgaacattac |
199 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718397 |
gtagattcttgattacacttattgatagtgttgctgttatttacttactgtgttccaattttatactatttgtagattctcgtttgatcttgaacattac |
41718298 |
T |
|
| Q |
200 |
acttattgaagttacaaattatataactagtatattcatgaaaaattggagtgatcaggggaccttaatgaaccattctcattgatttcaaatgataatt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718297 |
acttattgaagttacaaattatataactagtatattcatgaaaaattggagtgatcaggggaccttaatgaaccattctcattgatttcaaatgataatt |
41718198 |
T |
|
| Q |
300 |
atatactgacatgggatgcaaccttggtttttaagttagcatgtttaattttgtggattgaatccctgcccttccctctttccctctacatgaacttatt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718197 |
atatactgacatgggatgcaaccttggtttttaagttagcatgtttaattttttggattgaatccctgcccttccctctttccctctacatgaacttatt |
41718098 |
T |
|
| Q |
400 |
cttctgatattattttatggaccaccttctatgcacaagtatgtggacttggagtat |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718097 |
cttctgatattattttatggaccaccttctatgcacaagtatgtggacttggagtat |
41718041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University