View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19824_low_9 (Length: 386)
Name: NF19824_low_9
Description: NF19824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19824_low_9 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 386
Target Start/End: Original strand, 3279032 - 3279401
Alignment:
| Q |
16 |
atactttttctatgaacaaatgaaattataagaatgctcattaaataataaattaaacttttatagtttgcatgaattttacaaataagtaggacaaata |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3279032 |
atactttttctatgaacaaatgaaattataagaatgctcattaa-taataaattaaacttttatagtttgcatgaattttacaaataagtaggacaaata |
3279130 |
T |
|
| Q |
116 |
tatcactttaccactttctatttgaatgtcgtgaatattgactccaattgttcttgttaaatcaatcccatcagtgttgtgacnnnnnnnnggtgaatta |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3279131 |
tatcactttaccactttctatttgaatgtcgtgaatattgactccaattgttcttgttaaatcaatcccatcagtgttgtgacttttttttggtgaatta |
3279230 |
T |
|
| Q |
216 |
atatgaatatgtgagatagttacatcttgactatcggtcaccgcgatatgtgctcctggaccattgatatgggtgagtccatttatttgaagtccgtcac |
315 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3279231 |
atatgaatatgtgagatagttatatcttgactatcgatcaccgcgatatgtgctcctggaccattgatatgggtgagtccatttatttgaagtccgtcac |
3279330 |
T |
|
| Q |
316 |
atttatcgaactgtaaagcctgcattttaacattacaattggtgatgaaaaatatatttaatttaatttat |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3279331 |
atttatcgaactgtaaagcctgcattttaacattacaattggtgatgaaaaatatatttaatttaatttat |
3279401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 134 - 338
Target Start/End: Original strand, 3273933 - 3274137
Alignment:
| Q |
134 |
tatttgaatgtcgtgaatattgactccaattgttcttgttaaatcaatcccatcagtgttgtgacnnnnnnnnggtgaattaatatgaatatgtgagata |
233 |
Q |
| |
|
|||| ||||||| |||| |||||| | |||| ||||||||||| || ||||| |||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
3273933 |
tattggaatgtcatgaacattgacccggattgcccttgttaaatcgattccatcggtgttgtgactttcttttggtgaattaatatgaatatgggagata |
3274032 |
T |
|
| Q |
234 |
gttacatcttgactatcggtcaccgcgatatgtgctcctggaccattgatatgggtgagtccatttatttgaagtccgtcacatttatcgaactgtaaag |
333 |
Q |
| |
|
|||| ||||| ||||| |||||||| ||||||| |||||| ||||||||||| ||||||||| |||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
3274033 |
gttatgtcttggctatccgtcaccgcaatatgtggtcctggtccattgatatgagtgagtccagttatttgaagcccgtcacatttatcaaactgcaaag |
3274132 |
T |
|
| Q |
334 |
cctgc |
338 |
Q |
| |
|
||||| |
|
|
| T |
3274133 |
cctgc |
3274137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University