View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19825_high_1 (Length: 791)
Name: NF19825_high_1
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19825_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 621; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 1 - 774
Target Start/End: Original strand, 45447360 - 45448133
Alignment:
| Q |
1 |
ttgattccccactgtgaaaccattttctggggagagagacggcggagaagattgaagagaaaggcgcgggaagggagttagggtttttcaacagtcgtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45447360 |
ttgattccccactgtgaaaccattttctggggagagagacggcggagaagattgaagagaaaggcgcgggaagggagttagggtttttcagcagtcgtgg |
45447459 |
T |
|
| Q |
101 |
ccactcttagccaggttagagcaaggctcacgttatatgtctatcacagcgaaatggtaaggttttttgcagttgagtatctggtcacgagttcgattct |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45447460 |
ccactcttaggcaggttagagcaaggctaacgttatatgtctatcacagcgaaatggtaaggttttttgcagttgagtatctggtcacgagttcgattct |
45447559 |
T |
|
| Q |
201 |
cataactgccnnnnnnnccttctcgtaactgcnnnnnnnnagttgaatacgagaattatttggtaatccaaggatatgaaaaacaataaatataaacata |
300 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45447560 |
cataactgcctttttttccttctcgtaactgcttttttttagttgaatacgagaattatttggtaatccaaggatatgaaaaacaataaatataaatata |
45447659 |
T |
|
| Q |
301 |
aaaaagnnnnnnnnncacctccatacttttcgcacaccctccacgtttttcaaatttacttagtaccgattatatgtgtttatctttttcggattataaa |
400 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45447660 |
aaaaagtttttttttcacctccatacttttcgcacaccctccacgtttttcaaatttacttagtaccgattatatgtgtttatctttttcggattataaa |
45447759 |
T |
|
| Q |
401 |
attnnnnnnncatctagactacaagtaacaccagcaaaagatgcaggatttgaccattgaaaatataaataattatatcaaaatatcagtatatatacaa |
500 |
Q |
| |
|
||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45447760 |
attaaaaaaacgtctggactacaagtaacaccagcaaaagatgcaggatttgaccattgaaaatataaataattatatcaaaatatcagtatatatacaa |
45447859 |
T |
|
| Q |
501 |
atgaattttgttccctaatcatatacaatgagctaatcttttacgaggtctatggtatcatattccacactctaaaggttatcatcttcaactttgataa |
600 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45447860 |
atgagttttgttccctaatcatatacaatgagctaatcttttacgagatctatggtatcatattccacactctaaaggttatcatcttcaactttgataa |
45447959 |
T |
|
| Q |
601 |
catgttcaactttcttatcatcttcatccttgctaaggttttcaattatcatcacatagcagaatcaactgatggtgcttcaaaaacacattaggaggag |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45447960 |
catgttcaactttcttatcatcttcatccttgccaaggttttcaatcatcatcacatagtagaatcaactgatggtgcttcaaaaacacaccaggaggag |
45448059 |
T |
|
| Q |
701 |
ccacatatgttggtcttcctagcatttgtgaaggttcattcggtctttgttggtctttcatgatgacggttgat |
774 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
45448060 |
ccacatatgttggtcttcctagcatttgggaaggttcattcggtctttgttgttctttcatgatgacggttgat |
45448133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 460 - 497
Target Start/End: Complemental strand, 40279424 - 40279387
Alignment:
| Q |
460 |
aaaatataaataattatatcaaaatatcagtatatata |
497 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
40279424 |
aaaatatagataattatatcaaaatatcactatatata |
40279387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 441 - 527
Target Start/End: Original strand, 4040008 - 4040089
Alignment:
| Q |
441 |
atgcaggatttgaccattgaaaatataaataattatatcaaaatatcagtatatatacaaatgaattttgttccctaatcatataca |
527 |
Q |
| |
|
|||||||||||||| | | |||| ||| |||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
4040008 |
atgcaggatttgactaataaaaacatagataattatattaaaatatcagtatat-----aatgtgttttgttccctaatcatataca |
4040089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 671 - 752
Target Start/End: Complemental strand, 51940169 - 51940090
Alignment:
| Q |
671 |
gatggtgcttcaaaaacacattaggaggagccacatatgttggtcttcctagcatttgtgaaggttcattcggtctttgttg |
752 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||||| ||||||| |||||| ||||| | |||| |||||| |||||||||| |
|
|
| T |
51940169 |
gatggtgcttcaaaaacaca--aggagaaaccacaaatgttggcattcctaacattttttaaggctcattctgtctttgttg |
51940090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 500 - 620
Target Start/End: Complemental strand, 43239628 - 43239509
Alignment:
| Q |
500 |
aatgaattttgttccctaatcatataca-atgagctaatcttttacgaggtctatggtatcatattccacactctaaaggttatcatcttcaactttgat |
598 |
Q |
| |
|
||||| |||||||||||||||||| ||| ||| ||||| || ||| |||||||||||||||| ||||||| ||| |||||| |||| |||||| |
|
|
| T |
43239628 |
aatgatttttgttccctaatcataaacatttgaactaatagttggcgatgtctatggtatcatat--gacactcttaagactatcattttcacctttgac |
43239531 |
T |
|
| Q |
599 |
aacatgttcaactttcttatca |
620 |
Q |
| |
|
||||| |||||| ||||||||| |
|
|
| T |
43239530 |
aacattttcaaccttcttatca |
43239509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 657
Target Start/End: Complemental strand, 6023690 - 6023641
Alignment:
| Q |
608 |
aactttcttatcatcttcatccttgctaaggttttcaattatcatcacat |
657 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
6023690 |
aactttcttatcatcttcatccttctaaaggttttcaactatcaccacat |
6023641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University