View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19825_high_14 (Length: 327)
Name: NF19825_high_14
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19825_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 34120153 - 34120473
Alignment:
| Q |
1 |
tctacttcttctgcatattcttggcatgcttccctgttagtattagataaagattttgcatagtttttt-aggccaaatttatgcgattgagttaagccn |
99 |
Q |
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| T |
34120153 |
tctacttcttctgcatattcttggcatgcttccctgttaatattagataaagattttgcatagtttttttaggccaaatttatgagattgagttaagcca |
34120252 |
T |
|
| Q |
100 |
nnnnnn-ctaagattagaaaacatagctaaaaataaaattgtgagtgtattgagatacctaaactcaggaggattcttaggccaccgattttcccattgg |
198 |
Q |
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| T |
34120253 |
aaaaaaactaagattagaaaacatagctaaaaataaaattgtgagtgtattgagatacctaaactcaggaggattcttaggccaccgattttcccattgg |
34120352 |
T |
|
| Q |
199 |
aactgaaaagaaggtggtataaaagttggttgttgcacattaaaatcataaatttccttccagtccctaacattttttgtatgctctgcttcaaaatatc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34120353 |
aactgaaaagaaggtggtataaaagttggttgttgcacattaaaatcataaatttccttccagtccctaacattttttgtatgctctgcttcaaaatatc |
34120452 |
T |
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| Q |
299 |
caagcaagttaacttcatctc |
319 |
Q |
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||||||||||||||||||||| |
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| T |
34120453 |
caagcaagttaacttcatctc |
34120473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 47508391 - 47508347
Alignment:
| Q |
8 |
cttctgcatattcttggcatgcttccctgttagtattagataaag |
52 |
Q |
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| T |
47508391 |
cttctgcatattcttggcatgcttccctgttagtattagaaaaag |
47508347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 13627309 - 13627353
Alignment:
| Q |
8 |
cttctgcatattcttggcatgcttccctgttagtattagataaag |
52 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
13627309 |
cttctgcatattcttggcatgcttccctattagtattagaaaaag |
13627353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 11139524 - 11139476
Alignment:
| Q |
4 |
acttcttctgcatattcttggcatgcttccctgttagtattagataaag |
52 |
Q |
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|||||||||||||||||| |||||||||| |||||| ||||||| |||| |
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| T |
11139524 |
acttcttctgcatattctaggcatgcttctctgttaatattagaaaaag |
11139476 |
T |
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