View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19825_high_15 (Length: 320)

Name: NF19825_high_15
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19825_high_15
NF19825_high_15
[»] chr4 (1 HSPs)
chr4 (10-303)||(42188318-42188611)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 42188611 - 42188318
Alignment:
Q  10 agtgagatgaaaaactgaacattgaacaacnnnnnnnttagggaaaacagaatcaaaattatcacaacaaagaacgagattgaaaaattagcttaccatc 109  Q
    ||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42188611 agtgacatgaaaaactgaacattgaacaacaaaaaaattagggaaaacagaatcaaaattatcacaacaaagaatgagattgaaaaattagcttaccatc 42188512  T
Q  110 catgaaccatcttccatcagatgaaacatatgctttcttaataaaaaggtttaaatcactgagaatttgtacagcttccaaaagaattccatgctttctg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42188511 catgaaccatcttccatcagatgaaacatatgctttcttaataaaaaggtttaaatcactgagaatttgtacagcttccaaaagaattccatgctttctg 42188412  T
Q  210 gcactatcaaactgtgaaattaaatcaaaacagaaagattagtatcttaattaaaaattttacatgtaaacccaaattaattaaggaattttct 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||    
T  42188411 gcactatcaaactgtgaaattaaatcaaaacagaaagattagtatcttaattacattttttacatgtaaacccaaattaattaaggaattttct 42188318  T

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