View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19825_high_19 (Length: 268)
Name: NF19825_high_19
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19825_high_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 35848241 - 35848329
Alignment:
| Q |
168 |
aggtagttcaagttcaacaaaaagaagtagtggatcaaatgaaagaagaagaaatggtgtaagacaatatgttagatcaaagatgccta |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35848241 |
aggtagttcaagttcaacaaaaagaagtagtggatcaaatgaaagaagaagaaatggtgtaagacaatatgttagatcaaagatgccta |
35848329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 35848089 - 35848154
Alignment:
| Q |
16 |
cataataagtgttcaatatcctttgatttgaatgaagaagctagtcgtagtgatcaagatgttaac |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35848089 |
cataataagtgttcaatatcctttgatttgaatgaagaagctagtcgtagtgatcaagatgttaac |
35848154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 5691213 - 5691271
Alignment:
| Q |
20 |
ataagtgttcaatatcctttgatttgaatgaagaagctagtcgtagtgatcaagatgttaac |
81 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
5691213 |
ataagtgctcaatatcctttgatttgaaagaagaagcta---ttagtgatcaagatgttaac |
5691271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 41425812 - 41425754
Alignment:
| Q |
20 |
ataagtgttcaatatcctttgatttgaatgaagaagctagtcgtagtgatcaagatgttaac |
81 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41425812 |
ataagtgctcaatatcctttgatttgaatgaagaagcta---ttagtgatcaagatgttaac |
41425754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University