View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19825_high_30 (Length: 229)
Name: NF19825_high_30
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19825_high_30 |
 | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
| [»] scaffold1808 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
| [»] scaffold0684 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 6684641 - 6684834
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
6684641 |
tatcagccgtccattttgttttctgcttgattatttttgctccaagttgttgacactctacaaatttattttcctcgtctttcttcttcaaatcttcttg |
6684740 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgcttaagcagttgtcacatataaactataatatagtcac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
6684741 |
catccttttacagtattcaactttttgtcctgccaaaatagacaatataatgcatgcttaagcagtggtcacatataaactataagatagtcac |
6684834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 12592319 - 12592512
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12592319 |
tatcagccttccattttgttttccgcttgattctttttgctcctagttgttgatgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
12592418 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgcttaagcagttgtcacatataaactataatatagtcac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||| |||||||| |
|
|
| T |
12592419 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatacaatgcatgcttaagcaaaggtcacatataagctataagatagtcac |
12592512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 17719288 - 17719133
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgctt-gattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
17719288 |
tatcagccttccattttgttttctgctttgattctttttgttccaagttgttgacactctacaaatttattttccttctctttcttcatcaaatctt--- |
17719192 |
T |
|
| Q |
116 |
gcatccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17719191 |
gcatccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
17719133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 14668907 - 14668754
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
14668907 |
tatcagccttccattttgttttctgcttgattctttttgttccaagttgttgacactcta-aaatttattttccttctctttcttcatcaaatctt---g |
14668812 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
174 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14668811 |
catccttttacaatattcaactttttgtcctaccaaaataaacaatataatgcatgct |
14668754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 30821714 - 30821789
Alignment:
| Q |
107 |
aatcttctcgcatccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgcttaagcagt |
182 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30821714 |
aatcttctcgcatccttttacggtattcaactttttgtcctgccaaaataaacaatataatgcatgcttcagcagt |
30821789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 51759241 - 51759434
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51759241 |
tatcaaccttccattttattttctgcttgattctttttgctccaagttgttgacactctacaaatttattttccttgtctttcttcttcaaatcttctcg |
51759340 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgcttaagcagttgtcacatataaactataatatagtcac |
210 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
51759341 |
catccttttacagtattcaactttttatcctgccaaaataaataatataatggatgcttaagtagttgtcacatataaactataagatagtcac |
51759434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 15514183 - 15514373
Alignment:
| Q |
19 |
tcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcgca |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15514183 |
tcagccttccattttgttttttgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttatctttcttcttcaaatcttctcgca |
15514282 |
T |
|
| Q |
119 |
tccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgcttaagcagttgtcacatataaactataatatagtca |
209 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
15514283 |
tccttttatagtattcaactttttgtcttgccaaaataaacaatataatacatacttaagcagtaatcacatataaactataagatagtca |
15514373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 30267530 - 30267654
Alignment:
| Q |
85 |
ttttccttgtctttcttcttcaaatcttctcgcatccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgcttaagcagttg |
184 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| | || | |
|
|
| T |
30267530 |
ttttcctt-tctttcttcttcaaatcttctcacatccttttatagtattcaactttttgttctgccaaaacaaacaatataatgcatgcttatgtggtgg |
30267628 |
T |
|
| Q |
185 |
tcacatataaactataatatagtcac |
210 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
30267629 |
tcacatataaactataacatagtcac |
30267654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 44921673 - 44921788
Alignment:
| Q |
85 |
ttttccttgtctttcttcttcaaatcttctcgcatccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgcttaagcagttg |
184 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | | | |
|
|
| T |
44921673 |
ttttcctt-tctttcttcttcaaatcttctcacatccttttacagtattcaactttttgttatgccaaaataaacaatataatgcattcttaagtattgg |
44921771 |
T |
|
| Q |
185 |
tcacatataaactataa |
201 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
44921772 |
gcacatataaactataa |
44921788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 15539143 - 15539030
Alignment:
| Q |
36 |
tttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcgcatccttttacagtattca |
135 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| ||||||||||||| | |||||||| |||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
15539143 |
tttctgcttgattcttttttatccatgttgttgatgctctacaaatttgtcttccttgtgtttcttcttcaaatcttctcacatccttttagagtattca |
15539044 |
T |
|
| Q |
136 |
actttttgtcctgc |
149 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
15539043 |
actttttgttctgc |
15539030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 2942778 - 2942585
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2942778 |
tatcagccttccattttgttttctgcttgattatttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcctctcg |
2942679 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgcttaagcagttgtcacatataaactataatatagtcac |
210 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
2942678 |
catccttttacataattcaactttttatcctgccaaaataaacaatataatgcatgtttaagcagtggtcacatataagttataagatagtcac |
2942585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 10022566 - 10022758
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||| ||| |
|
|
| T |
10022566 |
tatcagccttccattttgttttctgcttgattctttttgctctaagttgtggacgctctacaaatttctttttcttgtctttcttcttcaaatcttttcg |
10022665 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgcttaagcagttgtcacatataaactataatatagtca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||| |
|
|
| T |
10022666 |
catccttttacagtattcaactttttgttttaccaaaataaacaatataatgcatgcttaatcagtggtcacatataaattataagatagtca |
10022758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 19747099 - 19747290
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
19747099 |
tatcagccttccattttgttttct--ttgattctttttgctccaagttgttgacactctacaaatttcttttccttctctttcttcttcaaatcttctcg |
19747196 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgcttaagcagttgtcacatataaactataatatagtcac |
210 |
Q |
| |
|
|||||||| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |
|
|
| T |
19747197 |
catcctttaatagtattcaactttttgttcagccaaaataaacaatataatgcatgcttaagcagtggtcacatataaactacaagatagtcac |
19747290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 9242048 - 9241894
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
9242048 |
tatcagccttcaattttgttttctgcttgattctttttgttccaagttgttgacactctacaaatttattttccttctctttcttcatcaaatctt---g |
9241952 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9241951 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
9241894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 27810394 - 27810551
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||| || |
|
|
| T |
27810394 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatatattttccttgtcttttttcttctaatcttttca |
27810493 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27810494 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
27810551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 18767432 - 18767586
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
18767432 |
tatcagcctttcattttgttttctgcttgattctttttgttccaagttgttgacactctacaaatttattttccttctctttcttcatcaaatctt---g |
18767528 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
174 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18767529 |
catccttttacagtattgaactttttgtcctgccaaaataaacaatataatgcatgct |
18767586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 19448983 - 19449137
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
19448983 |
tatcagccttccattttgtattatgcttgattctttttgttccaacttgttgacactctacaaatttattttccttctctttcttcatcaaatctt---g |
19449079 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
174 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19449080 |
catccttttacaatattcaactttttgtcctgccaaaataaacaatataatgcatgct |
19449137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 19532093 - 19531939
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
19532093 |
tatcagccttccattttgtattatgcttgattctttttgttccaacttgttgacactctacaaatttattttccttctctttcttcatcaaatctt---g |
19531997 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
174 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19531996 |
catccttttacaatattcaactttttgtcctgccaaaataaacaatataatgcatgct |
19531939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 5529266 - 5529310
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaag |
62 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
5529266 |
tatcagccttccattttgttttctacttga-tctttttgctccaag |
5529310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 17038081 - 17038238
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17038081 |
tatcagacttccattttgttttctgcttgattctttttgctccaagttgttgacactctacaaatttattttccttgtctttcttcttcaaatcttcttg |
17038180 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
174 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
17038181 |
aatccttttacagtattcaactatttggcctgccaaaataaacaatataatgcatgct |
17038238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 23616122 - 23615968
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
23616122 |
tatcagccttccattttgttttctgcttgattctttttgttccaagttgttgacactctacaaatttattttccttctctttcttcatcaaatctt---g |
23616026 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
174 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23616025 |
catccttttacaatattcaactttttgtcctgccaaaataaacaatataatgcatgct |
23615968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 23847518 - 23847364
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
23847518 |
tatcagccttccattttgttttctgcttgattctttttgttccaagttgttgacactctacaaatttattttccttctctttcttcatcaaatctt---g |
23847422 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
174 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23847421 |
catccttttacaatattcaactttttgtcctgccaaaataaacaatataatgcatgct |
23847364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 40422284 - 40422413
Alignment:
| Q |
20 |
cagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcgcat |
119 |
Q |
| |
|
||||||||||||| |||||||||| | | |||| ||| |||| | |||||||| |||| ||||| |||||||||| |||||||||||| |||||||| |
|
|
| T |
40422284 |
cagccttccatttcattttctgcttaaattttttatctctaagtcgctgacgctccacaagtttatcttccttgtctgccttcttcaaatcctctcgcat |
40422383 |
T |
|
| Q |
120 |
ccttttacagtattcaactttttgtcctgc |
149 |
Q |
| |
|
||||||| |||||||| |||||||| |||| |
|
|
| T |
40422384 |
ccttttatagtattcagctttttgttctgc |
40422413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 40262 - 40108
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
40262 |
tatcagccttccattttgttttctgcttgattctttttgttccaagttgttgacactctacaaatttattttccttctctttcttcatcaaatctt---g |
40166 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
174 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40165 |
catccttttacaatattcaactttttgtcctgccaaaataaacaatataatgcatgct |
40108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 1684522 - 1684368
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
1684522 |
tatcagccttccattttgttttctgcttgattctttttgttccaagttgttgacactctacaaatttattttccttctctttcttcatcaaatctt---g |
1684426 |
T |
|
| Q |
117 |
catccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
174 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1684425 |
catccttttatagtattcaactttttgtcctgccaaaataaacaatataatgcatgct |
1684368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 8142980 - 8142825
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
8142980 |
tatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttccttctctttcttcatcaaatctt---g |
8142884 |
T |
|
| Q |
117 |
catccttttacagtattcaac-tttttgtcctgccaaaataaacaatataatgcatgct |
174 |
Q |
| |
|
||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8142883 |
catccttttacggtattcaacttttttatcctgccaaaataaacaatataatgcatgct |
8142825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 47065607 - 47065484
Alignment:
| Q |
85 |
ttttccttgtctttcttcttcaaatcttctcgcatccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgcttaagcagttg |
184 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| | || | |
|
|
| T |
47065607 |
ttttcctt-tctttcttcttcaaatcttctcacatccttttatagtattcaactttttgttctgccaaaacaaacaatataatgcatgcttatgtggtgg |
47065509 |
T |
|
| Q |
185 |
tcacatataaactataatatagtca |
209 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
47065508 |
tcacatataaactataacatagtca |
47065484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 53300880 - 53301004
Alignment:
| Q |
85 |
ttttccttgtctttcttcttcaaatcttctcgcatccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgcttaagcagttg |
184 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||| | || | |
|
|
| T |
53300880 |
ttttcctt-tctttcttcttcaaatcttctcacgtccttttatagtattcaactttttgttctgccaaaacaaacaatataacgcatgcttatgtggtgg |
53300978 |
T |
|
| Q |
185 |
tcacatataaactataatatagtcac |
210 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
53300979 |
tcacatataaactataacatagtcac |
53301004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 25908744 - 25908615
Alignment:
| Q |
20 |
cagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcgcat |
119 |
Q |
| |
|
||||||||||||| |||||||||| | | |||| | | |||| | ||||||||||||| ||| | |||||||||| |||||||||||| |||||||| |
|
|
| T |
25908744 |
cagccttccatttcattttctgcttaaattttttatccctaagtcgctgacgctctacaagtttgtcttccttgtctgccttcttcaaatcctctcgcat |
25908645 |
T |
|
| Q |
120 |
ccttttacagtattcaactttttgtcctgc |
149 |
Q |
| |
|
||||||| |||||||| |||||||| |||| |
|
|
| T |
25908644 |
ccttttatagtattcagctttttgttctgc |
25908615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1808 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold1808
Description:
Target: scaffold1808; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 94 - 210
Target Start/End: Original strand, 1008 - 1123
Alignment:
| Q |
94 |
tctttcttcttcaaatcttctcgcatccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgcttaagcagttgtcacatata |
193 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
1008 |
tctttcttcttcaaatcttctcacatccttttacagtattaaactttttgttctgccaaaat-aacaatataatgcatgcttaagtagtggtcacatata |
1106 |
T |
|
| Q |
194 |
aactataatatagtcac |
210 |
Q |
| |
|
|||||||| ||| |||| |
|
|
| T |
1107 |
aactataacataatcac |
1123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 192 - 68
Alignment:
| Q |
85 |
ttttccttgtctttcttcttcaaatcttctcgcatccttttacagtattcaactttttgtcctgccaaaataaacaatataatgcatgcttaagcagttg |
184 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| ||||| ||||||||||||||||||||| | || | |
|
|
| T |
192 |
ttttcctt-tctttcttcttcaaatcttctcacatccttttatagtattcaactttttgttctggcaaaacaaacaatataatgcatgcttatgtggtgg |
94 |
T |
|
| Q |
185 |
tcacatataaactataatatagtcac |
210 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
93 |
tcacatataaactataacatagtcac |
68 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0684 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0684
Description:
Target: scaffold0684; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 311 - 198
Alignment:
| Q |
17 |
tatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatttattttccttgtctttcttcttcaaatcttctcg |
116 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||| ||||||||| | |
|
|
| T |
311 |
tatcaaccttccattt-gttttctgcttgattctttttgttccaagttgttgacactctacaaatttattttccttctctttctttatcaaatctt---g |
216 |
T |
|
| Q |
117 |
catccttttacagtattc |
134 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
215 |
catccttttacagtattc |
198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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