View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19825_high_5 (Length: 450)
Name: NF19825_high_5
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19825_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 21927627 - 21927188
Alignment:
| Q |
1 |
tttagacaaaaggtttatatcttgagattgtctttgactccatttgatcctcaaattcatttcacatttcaactaaaacaatatcctattgttatttcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
21927627 |
tttagacaaaaggtttatatcttgagattgtctttgactccatttgatcctcaaattcatttcacatttcaaattaaacaatatcctattgttatttcat |
21927528 |
T |
|
| Q |
101 |
ttgtaaatactatcaataagagtcaagaaatctctttaa--tgttgacaattgtttacacattatcacgcataaatttgtatgatgttctttttaggggt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21927527 |
ttgtaaatactatcaataagagtcaagaaatctctttaaaatgttggcaattgtttacacattatcacgcataaatttgtatgatgttctttttaggggt |
21927428 |
T |
|
| Q |
199 |
aattacattagctggacttgttcttttttgtctgtattttttgatctattatattgtaagggattcaacaagagatattaaatcatttttatcaaaaata |
298 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
21927427 |
aattacattagctggatttgttcttttttgtctgtattttttgatctattatattgtaatggattcaacaagagatattaaataatttttatctaaaata |
21927328 |
T |
|
| Q |
299 |
tatttgatgtgataataagaaaactaaattacttcaaagtttttgttatttatatttcggaaacatcaaatcatgtataataacagctattatgtcatgc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21927327 |
tatttgatgtgataataagaaaactaaattacttcaaagtttttgttatttatattttggaaacatcaaatcatgtataataacaactattatgtcatgc |
21927228 |
T |
|
| Q |
399 |
tcaattatcaaatttttagtcaataatataactaacttcg |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21927227 |
tcaattatcaaatttttagtcaataatataactaacttcg |
21927188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 271 - 413
Target Start/End: Complemental strand, 15390693 - 15390551
Alignment:
| Q |
271 |
agatattaaatcatttttatcaaaaatatatttgatgtgataataagaaaactaaattacttcaaagtttttgttatttatatttcggaaacatcaaatc |
370 |
Q |
| |
|
||||||||||| ||| |||||| ||| ||| | ||||||||||||||| || || || ||| |||||||| |||||||| ||| ||||||||||| || |
|
|
| T |
15390693 |
agatattaaataattcttatcatcaatttatctaatgtgataataagaagtctgaactatttcgaagtttttattatttatcttttggaaacatcaactc |
15390594 |
T |
|
| Q |
371 |
atgtataataacagctattatgtcatgctcaattatcaaattt |
413 |
Q |
| |
|
|||| ||| ||| ||||||| |||||||||||||| |||||| |
|
|
| T |
15390593 |
atgttcaatgacaactattatatcatgctcaattataaaattt |
15390551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 15390833 - 15390761
Alignment:
| Q |
138 |
aatgttgacaattgtttaca-cattatcacgcataaatttgtatgatgttctttttaggggtaattacattag |
209 |
Q |
| |
|
|||||||| ||||||||||| | |||| | |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15390833 |
aatgttgagaattgtttacaactttataatacataaatttgtatgttgttctttttaggggtaattacattag |
15390761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 17667077 - 17667017
Alignment:
| Q |
233 |
tattttttgatctattatattgtaagggattcaacaagagatattaaatcatttttatcaa |
293 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||||| |||| |||||| ||| ||||||| |
|
|
| T |
17667077 |
tatttttttatctattatattgtattggagtcaacaaaagattttaaataattcttatcaa |
17667017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University