View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19825_low_10 (Length: 412)

Name: NF19825_low_10
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19825_low_10
NF19825_low_10
[»] chr5 (2 HSPs)
chr5 (22-400)||(26608501-26608875)
chr5 (280-330)||(41169504-41169554)
[»] chr6 (2 HSPs)
chr6 (279-330)||(4032959-4033012)
chr6 (281-330)||(24110039-24110088)
[»] chr1 (1 HSPs)
chr1 (284-330)||(43884499-43884545)
[»] chr2 (2 HSPs)
chr2 (279-327)||(45300341-45300389)
chr2 (280-330)||(25666912-25666962)
[»] chr3 (1 HSPs)
chr3 (280-326)||(14345126-14345172)
[»] chr8 (1 HSPs)
chr8 (284-320)||(13772376-13772412)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 400
Target Start/End: Complemental strand, 26608875 - 26608501
Alignment:
Q  22 acgtgagaagtatatgttaaaagtcttaaattgaatgagatataagacttaaaaatgaatttataaaatatcttgttagaataacaaccgatgatagaag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||| | ||||||| |||||||||||||||||||||||||||||||||    
T  26608875 acgtgagaagtatatgttaaaagtcttaaattgaatgagata--agacttaaaaataattttataagatatcttgttagaataacaaccgatgatagaag 26608778  T
Q  122 aacaactagttagaatagcaatggtgatagaagaaaagaaaaatcgtaagacaatgaaatgcaatttttgtttacacagtttggccaattattgtatcta 221  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||    
T  26608777 aacaactagttagaatagcaatggtgataaaagaaaagaaaaatcgtaagacaatgaaatgcaatttttgtttacacagtttcgccaattattgt--cta 26608680  T
Q  222 ccactacgattatatagtgatatagttttacatattactttttgatgaattagggtttgagaaatgttaacaacacatattttaccatacatttttcaac 321  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||    
T  26608679 ccactacgattatatagtgatatagttttgcatattactttttgatgaattagggtttgagaaatgttagcaacacatattttatcacacatttttcaac 26608580  T
Q  322 acactctctccaattaaaaagtgtatgttaaaatatacgttgttatcatttctcttagagtttacggtgttacaagtat 400  Q
    | |||||||  || |||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  26608579 atactctctttaaataaaaattgtatgttaaaatatgcgttgttatcatttctcttagggtttacggtgttacaagtat 26608501  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 41169554 - 41169504
Alignment:
Q  280 gagaaatgttaacaacacatattttaccatacatttttcaacacactctct 330  Q
    |||||||| ||  ||||||||||||| || |||||||||||||||||||||    
T  41169554 gagaaatgctagtaacacatattttaacacacatttttcaacacactctct 41169504  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 330
Target Start/End: Original strand, 4032959 - 4033012
Alignment:
Q  279 tgagaaatgttaacaacacatattttaccat--acatttttcaacacactctct 330  Q
    |||||||||||| |||||||||||||| |||  |||||||||||||||||||||    
T  4032959 tgagaaatgttagcaacacatattttaacataaacatttttcaacacactctct 4033012  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 24110039 - 24110088
Alignment:
Q  281 agaaatgttaacaacacatattttaccatacatttttcaacacactctct 330  Q
    ||||||| || ||||||||||| ||  |||||||||||||||||||||||    
T  24110039 agaaatgctagcaacacatattctaaaatacatttttcaacacactctct 24110088  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 330
Target Start/End: Complemental strand, 43884545 - 43884499
Alignment:
Q  284 aatgttaacaacacatattttaccatacatttttcaacacactctct 330  Q
    |||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  43884545 aatgctaacaacacatattttaacatacattttttaacacactctct 43884499  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 45300341 - 45300389
Alignment:
Q  279 tgagaaatgttaacaacacatattttaccatacatttttcaacacactc 327  Q
    ||||||||||||||||||||| || || || ||||||||||||||||||    
T  45300341 tgagaaatgttaacaacacatcttctaacacacatttttcaacacactc 45300389  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 25666962 - 25666912
Alignment:
Q  280 gagaaatgttaacaacacatattttaccatacatttttcaacacactctct 330  Q
    |||||||| || ||||||| |||||| |||||| |||||||||||||||||    
T  25666962 gagaaatgctagcaacacacattttaacatacaattttcaacacactctct 25666912  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 326
Target Start/End: Original strand, 14345126 - 14345172
Alignment:
Q  280 gagaaatgttaacaacacatattttaccatacatttttcaacacact 326  Q
    ||||||||||| |||||||||||||| || | |||||||||||||||    
T  14345126 gagaaatgttagcaacacatattttaacacatatttttcaacacact 14345172  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 13772376 - 13772412
Alignment:
Q  284 aatgttaacaacacatattttaccatacatttttcaa 320  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  13772376 aatgctaacaacacatattttaacatacatttttcaa 13772412  T

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