View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19825_low_12 (Length: 386)

Name: NF19825_low_12
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19825_low_12
NF19825_low_12
[»] chr2 (17 HSPs)
chr2 (1-353)||(32615770-32616144)
chr2 (70-129)||(19243611-19243670)
chr2 (9-63)||(32634449-32634503)
chr2 (136-185)||(41042024-41042073)
chr2 (136-184)||(34652038-34652086)
chr2 (137-185)||(41032958-41033006)
chr2 (136-184)||(41809247-41809295)
chr2 (69-113)||(42852634-42852678)
chr2 (136-171)||(1939334-1939369)
chr2 (136-171)||(10285893-10285928)
chr2 (141-174)||(3611367-3611400)
chr2 (143-184)||(16867759-16867800)
chr2 (134-179)||(33525967-33526012)
chr2 (136-184)||(787352-787400)
chr2 (136-184)||(9556259-9556307)
chr2 (69-113)||(15370255-15370299)
chr2 (69-113)||(22878192-22878236)
[»] chr7 (14 HSPs)
chr7 (69-177)||(33894654-33894765)
chr7 (92-171)||(48157075-48157157)
chr7 (69-129)||(30751597-30751657)
chr7 (136-171)||(24363603-24363638)
chr7 (136-174)||(27496409-27496447)
chr7 (136-174)||(27503067-27503105)
chr7 (69-122)||(37064146-37064199)
chr7 (69-129)||(1418497-1418557)
chr7 (136-168)||(3468650-3468682)
chr7 (135-171)||(15740557-15740593)
chr7 (69-129)||(36598288-36598348)
chr7 (138-170)||(39281003-39281035)
chr7 (136-176)||(44151482-44151522)
chr7 (136-168)||(45078314-45078346)
[»] chr3 (15 HSPs)
chr3 (69-171)||(29771871-29771976)
chr3 (90-171)||(37273167-37273251)
chr3 (134-171)||(21862175-21862212)
chr3 (69-124)||(20194965-20195020)
chr3 (136-182)||(11039341-11039387)
chr3 (136-169)||(36200131-36200164)
chr3 (134-171)||(43397860-43397897)
chr3 (69-113)||(21872227-21872271)
chr3 (69-113)||(22667497-22667541)
chr3 (69-113)||(22724136-22724180)
chr3 (138-174)||(26542567-26542603)
chr3 (136-168)||(37155037-37155069)
chr3 (136-168)||(37200392-37200424)
chr3 (136-172)||(41671342-41671378)
chr3 (136-176)||(42745066-42745106)
[»] chr6 (14 HSPs)
chr6 (69-172)||(24973959-24974065)
chr6 (136-182)||(2160939-2160985)
chr6 (136-184)||(17241254-17241302)
chr6 (136-176)||(31583707-31583747)
chr6 (69-171)||(8420129-8420234)
chr6 (136-170)||(5566179-5566213)
chr6 (136-171)||(9667987-9668022)
chr6 (136-171)||(27909640-27909675)
chr6 (69-123)||(32171551-32171605)
chr6 (136-174)||(34939774-34939812)
chr6 (138-171)||(2167162-2167195)
chr6 (138-171)||(2178795-2178828)
chr6 (135-171)||(1575783-1575819)
chr6 (136-184)||(6647407-6647455)
[»] scaffold0286 (1 HSPs)
scaffold0286 (136-182)||(16132-16178)
[»] chr5 (10 HSPs)
chr5 (139-174)||(29590634-29590669)
chr5 (136-176)||(35963269-35963309)
chr5 (136-177)||(15074751-15074792)
chr5 (134-171)||(18704036-18704073)
chr5 (143-184)||(33533548-33533589)
chr5 (136-172)||(1899186-1899222)
chr5 (137-173)||(2092548-2092584)
chr5 (135-171)||(8651354-8651390)
chr5 (139-171)||(31694551-31694583)
chr5 (144-184)||(38104867-38104907)
[»] chr8 (14 HSPs)
chr8 (136-174)||(25869268-25869306)
chr8 (138-174)||(28769343-28769379)
chr8 (136-184)||(30277247-30277295)
chr8 (136-171)||(3600740-3600775)
chr8 (134-169)||(11185256-11185291)
chr8 (136-171)||(14339607-14339642)
chr8 (143-174)||(38336060-38336091)
chr8 (134-171)||(5088885-5088922)
chr8 (139-184)||(8062349-8062394)
chr8 (136-169)||(12361227-12361260)
chr8 (137-174)||(40356955-40356992)
chr8 (69-113)||(2364392-2364436)
chr8 (136-176)||(13000426-13000466)
chr8 (202-262)||(26215427-26215487)
[»] scaffold0311 (1 HSPs)
scaffold0311 (136-173)||(10619-10656)
[»] chr1 (25 HSPs)
chr1 (137-174)||(11211148-11211185)
chr1 (136-184)||(28689454-28689502)
chr1 (69-124)||(27807198-27807253)
chr1 (136-171)||(35017609-35017644)
chr1 (137-176)||(39347970-39348009)
chr1 (69-108)||(44815235-44815274)
chr1 (136-174)||(3244929-3244967)
chr1 (136-170)||(12477289-12477323)
chr1 (136-174)||(15579512-15579550)
chr1 (137-171)||(33108625-33108659)
chr1 (138-172)||(35669004-35669038)
chr1 (136-174)||(35925720-35925758)
chr1 (136-177)||(11695888-11695929)
chr1 (136-169)||(17420238-17420271)
chr1 (188-265)||(33527212-33527289)
chr1 (136-172)||(2522661-2522697)
chr1 (69-129)||(4549473-4549533)
chr1 (136-172)||(4768831-4768867)
chr1 (136-176)||(4868428-4868468)
chr1 (69-129)||(5157150-5157210)
chr1 (136-184)||(6279419-6279467)
chr1 (69-129)||(23373245-23373305)
chr1 (69-113)||(24460333-24460377)
chr1 (199-263)||(25719464-25719528)
chr1 (136-176)||(47917264-47917304)
[»] chr4 (9 HSPs)
chr4 (136-184)||(29467626-29467674)
chr4 (136-174)||(7694012-7694050)
chr4 (136-174)||(39438540-39438578)
chr4 (138-171)||(5131254-5131287)
chr4 (92-129)||(8074841-8074878)
chr4 (136-168)||(20656073-20656105)
chr4 (69-113)||(30770983-30771027)
chr4 (137-177)||(43824310-43824350)
chr4 (136-176)||(55547046-55547086)
[»] scaffold0254 (1 HSPs)
scaffold0254 (138-171)||(3506-3539)
[»] scaffold0147 (1 HSPs)
scaffold0147 (136-184)||(12706-12754)


Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 32616144 - 32615770
Alignment:
Q  1 gttgtcccttcaattcacgttcttttctcacgtgttcaatccatggtttgataaaactctgtttagaat--------------------tatttgaactt 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||    
T  32616144 gttgtcccttcaattcacgttcttttctcacgtgttcaatccatggtttgataaaactctgtttagaatacaataagattgtattgagttatttgaactt 32616045  T
Q  81 atcagctgacataagcatttgtgagactgtttgtgggagcttatagaaatgactaacatgtccataagttgttttcaacttatttccataaactttctaa 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32616044 atcagctgacataagcatttgtgagactgtttgtgggagcttatagaaatgactaacatgtccataagttgttttcaacttatttccataaactttctaa 32615945  T
Q  181 gataaaacttatagaatttatgaaaatagttttactctattttatcatttgttgcagtactagcttatacatacgcgcttatgctagaagcacgttatat 280  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  32615944 gataaaacttatagaatttatgaaaatagttttactttattttatcatttgttacagtaatagcttatacatacgcgcttatgctagaagcacgttatat 32615845  T
Q  281 catgtaatagtagat--tgcaagaaaaatattattataatatataacaatcatgtcaggctttgaattgcatcac 353  Q
    |||||||||||||||  |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  32615844 catgtaatagtagattgtgcaagaaaaatatcaatataatatataacaatcatgtcaggctttgaattgcatcac 32615770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 19243670 - 19243611
Alignment:
Q  70 tatttgaacttatcagctgacataagcatttgtgagactgtttgtgggagcttatagaaa 129  Q
    ||||||||||||||  ||||||||||||||| |||||||||||| | |||||||||||||    
T  19243670 tatttgaacttatctactgacataagcatttctgagactgtttgggcgagcttatagaaa 19243611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 32634503 - 32634449
Alignment:
Q  9 ttcaattcacgttcttttctcacgtgttcaatccatggtttgataaaactctgtt 63  Q
    ||||||||||| |||||||||  ||| ||||||||||||||||||||||||||||    
T  32634503 ttcaattcacgctcttttctcgtgtgctcaatccatggtttgataaaactctgtt 32634449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 41042024 - 41042073
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttctaagataa 185  Q
    |||||||||| || ||||||||||||||||||||||||| || |||||||    
T  41042024 acatgtccatcagctgttttcaacttatttccataaactctccaagataa 41042073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 34652038 - 34652086
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttctaagata 184  Q
    ||||||||||||| |||||||||||||||||||||| || || ||||||    
T  34652038 acatgtccataagctgttttcaacttatttccataagctctccaagata 34652086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 41032958 - 41033006
Alignment:
Q  137 catgtccataagttgttttcaacttatttccataaactttctaagataa 185  Q
    |||||| |||||||||||||| |||||||||||||||| | ||||||||    
T  41032958 catgtctataagttgttttcagcttatttccataaactctataagataa 41033006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 41809247 - 41809295
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttctaagata 184  Q
    |||||| ||||||||||||| | ||||||||||||| ||||||||||||    
T  41809247 acatgttcataagttgtttttagcttatttccataagctttctaagata 41809295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 42852634 - 42852678
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 113  Q
    ||||||||||||||| |||| |||||||| |||||||||||||||    
T  42852634 ttatttgaacttatctgctggcataagcacttgtgagactgtttg 42852678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 1939334 - 1939369
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataa 171  Q
    ||||||||||||| ||||||||||||||||||||||    
T  1939334 acatgtccataagctgttttcaacttatttccataa 1939369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 10285928 - 10285893
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataa 171  Q
    ||||||||||||| ||||||||||||||||||||||    
T  10285928 acatgtccataagctgttttcaacttatttccataa 10285893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 3611400 - 3611367
Alignment:
Q  141 tccataagttgttttcaacttatttccataaact 174  Q
    |||||||||||||||||||||||||||| |||||    
T  3611400 tccataagttgttttcaacttatttccacaaact 3611367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 16867800 - 16867759
Alignment:
Q  143 cataagttgttttcaacttatttccataaactttctaagata 184  Q
    ||||||||||||||||||||||||||||| || || ||||||    
T  16867800 cataagttgttttcaacttatttccataagctctccaagata 16867759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 33525967 - 33526012
Alignment:
Q  134 taacatgtccataagttgttttcaacttatttccataaactttcta 179  Q
    |||||||||||||||||| ||||| |||||||| |||||| |||||    
T  33525967 taacatgtccataagttggtttcagcttatttctataaaccttcta 33526012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 787400 - 787352
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttctaagata 184  Q
    ||||||||||||| |||||||| ||||| |||||||||  |||||||||    
T  787400 acatgtccataagctgttttcagcttatctccataaaccatctaagata 787352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 9556307 - 9556259
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttctaagata 184  Q
    |||||||||||||| | ||||||||||||| ||||| ||||||| ||||    
T  9556307 acatgtccataagtagatttcaacttattttcataagctttctaggata 9556259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 15370255 - 15370299
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 113  Q
    |||||||| ||||||  ||| ||||||||||||||||||||||||    
T  15370255 ttatttgagcttatctactggcataagcatttgtgagactgtttg 15370299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 22878236 - 22878192
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 113  Q
    |||||||| ||||||  |||||||||||| |||||||||||||||    
T  22878236 ttatttgagcttatccactgacataagcacttgtgagactgtttg 22878192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 177
Target Start/End: Complemental strand, 33894765 - 33894654
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttgtgggagcttatagaaatgac---taacatgtccataagttgttttcaacttattt 165  Q
    |||||||| |||||||  ||||||||||| ||||||||||||||||| ||||||||  |||   |   | |||||||||||||||||||||| |||||||    
T  33894765 ttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttattt 33894666  T
Q  166 ccataaactttc 177  Q
    | ||||||||||    
T  33894665 caataaactttc 33894654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 48157075 - 48157157
Alignment:
Q  92 taagcatttgtgagactgtttgtgggagcttatagaaatgactaa---catgtccataagttgttttcaacttatttccataa 171  Q
    |||||||||||||||||||||| | |||||||||||||  ||| |   |||||||||||| |||||||| |||||||||||||    
T  48157075 taagcatttgtgagactgtttgggagagcttatagaaacaacttatgccatgtccataagctgttttcagcttatttccataa 48157157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 30751657 - 30751597
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttgtgggagcttatagaaa 129  Q
    |||||| ||||||||  |||||||||||| ||||| ||||||||| | |||||||||||||    
T  30751657 ttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagcttatagaaa 30751597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 24363603 - 24363638
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataa 171  Q
    |||||||||||||||||||||| |||||||||||||    
T  24363603 acatgtccataagttgttttcagcttatttccataa 24363638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 27496409 - 27496447
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaact 174  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  27496409 acatgtccataagctgttttcagcttatttccataaact 27496447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 27503067 - 27503105
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaact 174  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  27503067 acatgtccataagctgttttcagcttatttccataaact 27503105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 37064146 - 37064199
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttgtgggagctt 122  Q
    |||||||||||||||   ||||||||||| ||||||||| ||||||| ||||||    
T  37064146 ttatttgaacttatctagtgacataagcacttgtgagacggtttgtgagagctt 37064199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 1418557 - 1418497
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttgtgggagcttatagaaa 129  Q
    |||||||| ||||||  ||| |||||||| || |||| ||||||||| |||||||||||||    
T  1418557 ttatttgagcttatctactggcataagcacttatgaggctgtttgtgagagcttatagaaa 1418497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 3468682 - 3468650
Alignment:
Q  136 acatgtccataagttgttttcaacttatttcca 168  Q
    ||||||||||||||||||| |||||||||||||    
T  3468682 acatgtccataagttgtttccaacttatttcca 3468650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 15740557 - 15740593
Alignment:
Q  135 aacatgtccataagttgttttcaacttatttccataa 171  Q
    |||||||||||||| |||||||||||||||| |||||    
T  15740557 aacatgtccataaggtgttttcaacttattttcataa 15740593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 36598288 - 36598348
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttgtgggagcttatagaaa 129  Q
    ||||||||||||| |  |||||||||||| |||||||| |||||| | |||||||| ||||    
T  36598288 ttatttgaacttaactactgacataagcaattgtgagattgtttgagagagcttatggaaa 36598348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 39281035 - 39281003
Alignment:
Q  138 atgtccataagttgttttcaacttatttccata 170  Q
    |||||||||||||||||||| ||||||||||||    
T  39281035 atgtccataagttgttttcagcttatttccata 39281003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 44151482 - 44151522
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaacttt 176  Q
    ||||||||||||| |||||||| ||||||||||||| ||||    
T  44151482 acatgtccataagatgttttcagcttatttccataagcttt 44151522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 45078346 - 45078314
Alignment:
Q  136 acatgtccataagttgttttcaacttatttcca 168  Q
    ||||||||||||| |||||||||||||||||||    
T  45078346 acatgtccataagctgttttcaacttatttcca 45078314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 29771976 - 29771871
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttgtgggagcttatagaaatgactaa---catgtccataagttgttttcaacttattt 165  Q
    |||||||||||||||| |||||||||  | | |||||||| ||| || ||||||| |||||  ||| |   |||||||||||||||||||||||||||||    
T  29771976 ttatttgaacttatcaactgacataaatactcgtgagactatttatgagagcttaaagaaacaacttaggacatgtccataagttgttttcaacttattt 29771877  T
Q  166 ccataa 171  Q
    ||||||    
T  29771876 ccataa 29771871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 37273251 - 37273167
Alignment:
Q  90 cataagcatttgtgagactgtttgtgggagcttatagaaatgactaa---catgtccataagttgttttcaacttatttccataa 171  Q
    |||||||| | ||||||||||||| | |||||||| ||||  ||| |   |||||||||||||||||||||||||||||||||||    
T  37273251 cataagcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataa 37273167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 21862175 - 21862212
Alignment:
Q  134 taacatgtccataagttgttttcaacttatttccataa 171  Q
    |||||||||||||||||||||||| |||||||||||||    
T  21862175 taacatgtccataagttgttttcagcttatttccataa 21862212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 20194965 - 20195020
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttgtgggagcttat 124  Q
    |||||||||||||||  ||  |||||||| ||||||||||||||||| ||||||||    
T  20194965 ttatttgaacttatcttcttgcataagcagttgtgagactgtttgtgagagcttat 20195020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 11039341 - 11039387
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttctaaga 182  Q
    |||||||||||||||||||||| ||||| ||||||| || |||||||    
T  11039341 acatgtccataagttgttttcagcttatctccataagctatctaaga 11039387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 36200164 - 36200131
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccat 169  Q
    |||||||||||||||||||||| |||||||||||    
T  36200164 acatgtccataagttgttttcagcttatttccat 36200131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 43397897 - 43397860
Alignment:
Q  134 taacatgtccataagttgttttcaacttatttccataa 171  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  43397897 taacatgtccataaattgttttcaacttacttccataa 43397860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 21872227 - 21872271
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 113  Q
    |||||||| ||||||  |||||||||||| |||||||||||||||    
T  21872227 ttatttgatcttatctactgacataagcacttgtgagactgtttg 21872271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 22667541 - 22667497
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 113  Q
    |||||||| ||||||  |||||||||||| |||||||||||||||    
T  22667541 ttatttgagcttatctactgacataagcacttgtgagactgtttg 22667497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 22724180 - 22724136
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 113  Q
    |||||||| ||||||  |||||||||||| |||||||||||||||    
T  22724180 ttatttgagcttatctactgacataagcacttgtgagactgtttg 22724136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 26542603 - 26542567
Alignment:
Q  138 atgtccataagttgttttcaacttatttccataaact 174  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  26542603 atgtctataacttgttttcaacttatttccataaact 26542567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 37155069 - 37155037
Alignment:
Q  136 acatgtccataagttgttttcaacttatttcca 168  Q
    ||||||||||||||||||||| |||||||||||    
T  37155069 acatgtccataagttgttttctacttatttcca 37155037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 37200424 - 37200392
Alignment:
Q  136 acatgtccataagttgttttcaacttatttcca 168  Q
    ||||||||||||||||||||| |||||||||||    
T  37200424 acatgtccataagttgttttctacttatttcca 37200392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 41671378 - 41671342
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaa 172  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  41671378 acatgtctataagttgttttcaacttattttcataaa 41671342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 42745106 - 42745066
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaacttt 176  Q
    |||||| ||||||||||||||| ||||||||||||| ||||    
T  42745106 acatgttcataagttgttttcatcttatttccataagcttt 42745066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 24973959 - 24974065
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttgtgggagcttatagaaatgac---taacatgtccataagttgttttcaacttattt 165  Q
    ||||||||||||||| ||||||||||||| |||| ||| ||||||   |||||||||| ||| ||   ||||||||| |||||||  ||||| |||||||    
T  24973959 ttatttgaacttatctgctgacataagcacttgtaagattgtttggtagagcttataggaataacttataacatgtcgataagtttctttcagcttattt 24974058  T
Q  166 ccataaa 172  Q
    |||||||    
T  24974059 ccataaa 24974065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 2160939 - 2160985
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttctaaga 182  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||    
T  2160939 acatgtccataagttgttttcaacttatttccataatctttccaaga 2160985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 17241254 - 17241302
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttctaagata 184  Q
    |||||| |||||||||||||||||||||||||||||||| || ||||||    
T  17241254 acatgttcataagttgttttcaacttatttccataaactctccaagata 17241302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 31583747 - 31583707
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaacttt 176  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  31583747 acatgtccataagttgttttcaacttatttccataagcttt 31583707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 8420129 - 8420234
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttgtgggagcttatagaaatgac---taacatgtccataagttgttttcaacttattt 165  Q
    |||||||| ||||||   |||||||| || ||||||||||||| ||| ||||||||||||||  |   | ||||||||| ||| | ||||||||||||||    
T  8420129 ttatttgagcttatctattgacataaacacttgtgagactgttagtgagagcttatagaaatagcttatgacatgtccacaagctattttcaacttattt 8420228  T
Q  166 ccataa 171  Q
    ||||||    
T  8420229 ccataa 8420234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 5566179 - 5566213
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccata 170  Q
    |||||||||||||||||||||||||||||||||||    
T  5566179 acatgtccataagttgttttcaacttatttccata 5566213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 9667987 - 9668022
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataa 171  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9667987 acatgtccataagctgttttcaacttatttccataa 9668022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 27909640 - 27909675
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataa 171  Q
    |||||||||||||||||||||| |||||||||||||    
T  27909640 acatgtccataagttgttttcagcttatttccataa 27909675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 32171605 - 32171551
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttgtgggagctta 123  Q
    ||||||||||||||   |||||||||||||||||||||||| ||| | |||||||    
T  32171605 ttatttgaacttatttactgacataagcatttgtgagactggttgggagagctta 32171551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 34939812 - 34939774
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaact 174  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  34939812 acatgtccataaattgttttcagcttatttccataaact 34939774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 2167162 - 2167195
Alignment:
Q  138 atgtccataagttgttttcaacttatttccataa 171  Q
    |||||||||||||||||||| |||||||||||||    
T  2167162 atgtccataagttgttttcagcttatttccataa 2167195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 2178795 - 2178828
Alignment:
Q  138 atgtccataagttgttttcaacttatttccataa 171  Q
    |||||||||||||||||||| |||||||||||||    
T  2178795 atgtccataagttgttttcagcttatttccataa 2178828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 1575819 - 1575783
Alignment:
Q  135 aacatgtccataagttgttttcaacttatttccataa 171  Q
    |||||||||||||| |||||||||||||||| |||||    
T  1575819 aacatgtccataaggtgttttcaacttattttcataa 1575783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 6647455 - 6647407
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttctaagata 184  Q
    |||||| |||||| |||||||||||||||| ||||| || |||||||||    
T  6647455 acatgttcataagatgttttcaacttattttcataagctctctaagata 6647407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 16178 - 16132
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttctaaga 182  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||    
T  16178 acatgtccataagttgttttcaacttatttccataatctttccaaga 16132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 174
Target Start/End: Original strand, 29590634 - 29590669
Alignment:
Q  139 tgtccataagttgttttcaacttatttccataaact 174  Q
    ||||||||||||||||||||||||||||||||||||    
T  29590634 tgtccataagttgttttcaacttatttccataaact 29590669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 35963309 - 35963269
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaacttt 176  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  35963309 acatgtccataagttgttttcagcttatttccataagcttt 35963269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 15074751 - 15074792
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttc 177  Q
    ||||||||||||| |||||||| ||||||||||||| |||||    
T  15074751 acatgtccataagctgttttcagcttatttccataagctttc 15074792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 18704036 - 18704073
Alignment:
Q  134 taacatgtccataagttgttttcaacttatttccataa 171  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  18704036 taacatgtctataagttgttttcagcttatttccataa 18704073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 33533548 - 33533589
Alignment:
Q  143 cataagttgttttcaacttatttccataaactttctaagata 184  Q
    ||||||||||||||||||||||||||||| || || ||||||    
T  33533548 cataagttgttttcaacttatttccataagctctccaagata 33533589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 1899222 - 1899186
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaa 172  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  1899222 acatgtgcataagttgttttcagcttatttccataaa 1899186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 2092548 - 2092584
Alignment:
Q  137 catgtccataagttgttttcaacttatttccataaac 173  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  2092548 catgtccataagttgttttcaactttttttcataaac 2092584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 8651354 - 8651390
Alignment:
Q  135 aacatgtccataagttgttttcaacttatttccataa 171  Q
    ||||||||||||||||||||||| | |||||||||||    
T  8651354 aacatgtccataagttgttttcagcatatttccataa 8651390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 31694583 - 31694551
Alignment:
Q  139 tgtccataagttgttttcaacttatttccataa 171  Q
    ||||||||||||||||||||||||||| |||||    
T  31694583 tgtccataagttgttttcaacttattttcataa 31694551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 38104867 - 38104907
Alignment:
Q  144 ataagttgttttcaacttatttccataaactttctaagata 184  Q
    |||||||||||||| ||||||||||||| || |||||||||    
T  38104867 ataagttgttttcagcttatttccataagctctctaagata 38104907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 25869268 - 25869306
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaact 174  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  25869268 acatgtccataagttgttttcagcttatttccataaact 25869306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 28769343 - 28769379
Alignment:
Q  138 atgtccataagttgttttcaacttatttccataaact 174  Q
    |||||||||||||||||||| ||||||||||||||||    
T  28769343 atgtccataagttgttttcagcttatttccataaact 28769379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 30277247 - 30277295
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttctaagata 184  Q
    ||||| |||||||||||||||| |||||||||||||||| |||| ||||    
T  30277247 acatggccataagttgttttcagcttatttccataaactctctaggata 30277295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 3600740 - 3600775
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataa 171  Q
    |||||||||||||||||||||||||||||| |||||    
T  3600740 acatgtccataagttgttttcaacttattttcataa 3600775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 169
Target Start/End: Complemental strand, 11185291 - 11185256
Alignment:
Q  134 taacatgtccataagttgttttcaacttatttccat 169  Q
    |||||||| |||||||||||||||||||||||||||    
T  11185291 taacatgttcataagttgttttcaacttatttccat 11185256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 14339607 - 14339642
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataa 171  Q
    |||||||||||||||||||||||||||||| |||||    
T  14339607 acatgtccataagttgttttcaacttattttcataa 14339642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 174
Target Start/End: Original strand, 38336060 - 38336091
Alignment:
Q  143 cataagttgttttcaacttatttccataaact 174  Q
    ||||||||||||||||||||||||||||||||    
T  38336060 cataagttgttttcaacttatttccataaact 38336091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 5088922 - 5088885
Alignment:
Q  134 taacatgtccataagttgttttcaacttatttccataa 171  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  5088922 taacatgtccataagctgttttcaacttatttcaataa 5088885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 8062394 - 8062349
Alignment:
Q  139 tgtccataagttgttttcaacttatttccataaactttctaagata 184  Q
    |||||||||| |||||||| ||||||||||||| || |||||||||    
T  8062394 tgtccataagatgttttcagcttatttccataatctctctaagata 8062349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 12361260 - 12361227
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccat 169  Q
    ||||||||||||| ||||||||||||||||||||    
T  12361260 acatgtccataagctgttttcaacttatttccat 12361227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 40356992 - 40356955
Alignment:
Q  137 catgtccataagttgttttcaacttatttccataaact 174  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  40356992 catgtccataagctgttttcaacatatttccataaact 40356955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 2364392 - 2364436
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 113  Q
    |||||||||||||||  |||||||||| | |||||||||||||||    
T  2364392 ttatttgaacttatcttctgacataagtacttgtgagactgtttg 2364436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 13000426 - 13000466
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaacttt 176  Q
    ||||||||| |||||||||||| ||||||||||||| ||||    
T  13000426 acatgtccacaagttgttttcagcttatttccataagcttt 13000466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 26215487 - 26215427
Alignment:
Q  202 gaaaatagttttactctattttatcatttgttgcagtactagcttatacatacgcgcttat 262  Q
    ||||||||||| ||| ||||||||| ||||||  || | ||||||||||||| ||||||||    
T  26215487 gaaaatagtttaactttattttatcttttgttatagaaatagcttatacataagcgcttat 26215427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 10619 - 10656
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaac 173  Q
    |||||||||||||||||||||| |||||||||||||||    
T  10619 acatgtccataagttgttttcagcttatttccataaac 10656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 11211185 - 11211148
Alignment:
Q  137 catgtccataagttgttttcaacttatttccataaact 174  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  11211185 catgtccataagttgtttttaacttatttccataaact 11211148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 28689454 - 28689502
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttctaagata 184  Q
    |||||||||||||||||||||| ||||||| ||||| ||||| ||||||    
T  28689454 acatgtccataagttgttttcagcttattttcataagctttccaagata 28689502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 27807253 - 27807198
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttgtgggagcttat 124  Q
    |||||||||||| ||  ||||||||||||||||| |||||||||| | ||||||||    
T  27807253 ttatttgaacttttctactgacataagcatttgtaagactgtttgagagagcttat 27807198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 35017644 - 35017609
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataa 171  Q
    ||||||||||||||| ||||||||||||||||||||    
T  35017644 acatgtccataagttattttcaacttatttccataa 35017609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 39347970 - 39348009
Alignment:
Q  137 catgtccataagttgttttcaacttatttccataaacttt 176  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  39347970 catgtccataagttgttttcagcttatttccataagcttt 39348009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 108
Target Start/End: Original strand, 44815235 - 44815274
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagact 108  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  44815235 ttatttgaacttatctactgacataagcatttgtgagact 44815274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 3244967 - 3244929
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaact 174  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  3244967 acatgtccataagctattttcaacttatttccataaact 3244929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 170
Target Start/End: Original strand, 12477289 - 12477323
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccata 170  Q
    |||||||||||||||||||||| ||||||||||||    
T  12477289 acatgtccataagttgttttcagcttatttccata 12477323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 15579550 - 15579512
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaact 174  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  15579550 acatgtccataagttgttctcagcttatttccataaact 15579512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 33108625 - 33108659
Alignment:
Q  137 catgtccataagttgttttcaacttatttccataa 171  Q
    |||| ||||||||||||||||||||||||||||||    
T  33108625 catgaccataagttgttttcaacttatttccataa 33108659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 35669038 - 35669004
Alignment:
Q  138 atgtccataagttgttttcaacttatttccataaa 172  Q
    |||||||||| ||||||||||||||||||||||||    
T  35669038 atgtccataaattgttttcaacttatttccataaa 35669004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 35925758 - 35925720
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaact 174  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  35925758 acatgttcataagctgttttcaacttatttccataaact 35925720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 11695929 - 11695888
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttc 177  Q
    ||||||||||||| |||||||||||||||| ||||| |||||    
T  11695929 acatgtccataagctgttttcaacttattttcataagctttc 11695888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 17420271 - 17420238
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccat 169  Q
    |||||||||||| |||||||||||||||||||||    
T  17420271 acatgtccataaattgttttcaacttatttccat 17420238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 33527212 - 33527289
Alignment:
Q  188 cttatagaatttatgaaaatagttttactctattttatcatttgttgcagtactagcttatacatacgcgcttatgct 265  Q
    |||||||| | |||||||| ||||| ||| ||||||||| ||||||  || | |||||||| |||| |||||||||||    
T  33527212 cttatagattatatgaaaacagtttgactgtattttatcttttgttttagaaatagcttattcataagcgcttatgct 33527289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 2522697 - 2522661
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaa 172  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  2522697 acatgtccgtaatttgttttcaacttatttccataaa 2522661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 4549473 - 4549533
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttgtgggagcttatagaaa 129  Q
    ||||||||  |||||  ||| ||||||||||| |||||||||||| | |||||||||||||    
T  4549473 ttatttgagattatctactggcataagcatttctgagactgtttgggagagcttatagaaa 4549533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 4768831 - 4768867
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaa 172  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  4768831 acatgtccataacttgttttcagcttatttccataaa 4768867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 4868468 - 4868428
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaacttt 176  Q
    ||||||| |||||||||||||||||||||| ||||| ||||    
T  4868468 acatgtcaataagttgttttcaacttatttacataagcttt 4868428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 5157210 - 5157150
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttgtgggagcttatagaaa 129  Q
    |||||||||||||||  | ||||||| || |||||| |||||||| | |||||||||||||    
T  5157210 ttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttatagaaa 5157150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 6279467 - 6279419
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttctaagata 184  Q
    |||||||||||||||||||||| | ||||||||||| || |||| ||||    
T  6279467 acatgtccataagttgttttcagcgtatttccataagctctctaggata 6279419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 23373245 - 23373305
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttgtgggagcttatagaaa 129  Q
    |||||||||||| ||  |||| ||||||| |||||||| |||||| | |||||||||||||    
T  23373245 ttatttgaacttgtctactgatataagcacttgtgagattgtttgggagagcttatagaaa 23373305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 24460333 - 24460377
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 113  Q
    |||||||||||||||  ||||||| |||| |||||||||||||||    
T  24460333 ttatttgaacttatctactgacatgagcacttgtgagactgtttg 24460377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 25719528 - 25719464
Alignment:
Q  199 tatgaaaatagttttactctattttatcatttgttgcagtactagcttatacatacgcgcttatg 263  Q
    |||||||||||||||||| ||||| ||| ||| || ||| | |||||||| ||||||| ||||||    
T  25719528 tatgaaaatagttttactttatttcatcttttattacagaaatagcttattcatacgcacttatg 25719464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 47917304 - 47917264
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaacttt 176  Q
    |||||| ||||||||||||||||||||||||  ||||||||    
T  47917304 acatgttcataagttgttttcaacttatttctttaaacttt 47917264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 29467626 - 29467674
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttctaagata 184  Q
    ||||||||||||| |||||||| |||||||||||||||| |||| ||||    
T  29467626 acatgtccataagctgttttcagcttatttccataaactctctaggata 29467674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 7694012 - 7694050
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaact 174  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  7694012 acatgttcataagttgttttcagcttatttccataaact 7694050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 39438540 - 39438578
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaact 174  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  39438540 acatgtccataagttgttttcaacttattttcattaact 39438578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 5131254 - 5131287
Alignment:
Q  138 atgtccataagttgttttcaacttatttccataa 171  Q
    |||||||||||||||||||| |||||||||||||    
T  5131254 atgtccataagttgttttcagcttatttccataa 5131287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 8074878 - 8074841
Alignment:
Q  92 taagcatttgtgagactgtttgtgggagcttatagaaa 129  Q
    |||||||||||||||||||||| | |||||||||||||    
T  8074878 taagcatttgtgagactgtttgagagagcttatagaaa 8074841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 20656105 - 20656073
Alignment:
Q  136 acatgtccataagttgttttcaacttatttcca 168  Q
    ||||||||||||||||| |||||||||||||||    
T  20656105 acatgtccataagttgtcttcaacttatttcca 20656073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 30771027 - 30770983
Alignment:
Q  69 ttatttgaacttatcagctgacataagcatttgtgagactgtttg 113  Q
    ||||||||| |||||  ||||||||||||||||| ||||||||||    
T  30771027 ttatttgaatttatccactgacataagcatttgtaagactgtttg 30770983  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 43824350 - 43824310
Alignment:
Q  137 catgtccataagttgttttcaacttatttccataaactttc 177  Q
    ||||| ||||||||||||||| ||||||||||||| |||||    
T  43824350 catgttcataagttgttttcagcttatttccataagctttc 43824310  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 55547046 - 55547086
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaacttt 176  Q
    ||||||| |||||||||||| | ||||||||||||||||||    
T  55547046 acatgtctataagttgtttttagcttatttccataaacttt 55547086  T

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Target: scaffold0254 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 3539 - 3506
Alignment:
Q  138 atgtccataagttgttttcaacttatttccataa 171  Q
    |||||||||||||||||||| |||||||||||||    
T  3539 atgtccataagttgttttcagcttatttccataa 3506  T

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Target: scaffold0147 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 12706 - 12754
Alignment:
Q  136 acatgtccataagttgttttcaacttatttccataaactttctaagata 184  Q
    |||||||||||||||||||||| ||||  ||||||| || |||||||||    
T  12706 acatgtccataagttgttttcagcttagctccataagctctctaagata 12754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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