View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19825_low_14 (Length: 366)
Name: NF19825_low_14
Description: NF19825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19825_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 46657108 - 46656776
Alignment:
| Q |
19 |
taaatgtctccattggatcaacaacagcttcaacaccaatcctcacaccaatcttaagcacttgcacaatcctaaagcaagttcctttagttgtgaagaa |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46657108 |
taaatatctccattggatcaacaacagcttcaacaccaatcctcacaccaatcttaagaacttgcacaatcctaaagcaatttcctttagttgtgaagaa |
46657009 |
T |
|
| Q |
119 |
ggaatgtaagacaaactaccaaaacatgcatagatgacagagcaagctttatttcaaataaaaaactttagacatttggtttcagaatcattgatgcatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46657008 |
ggaatgtaagacaaactaccaaaacatgcatatatgacagagcaagctttgtttcaaataaaaaactttagacatttggtttcagaatcattgatgcatc |
46656909 |
T |
|
| Q |
219 |
ccttatcttatcttttttaccaaaccaaacctttttagcaactttctcataattaacctcaaaaagtattcaccaatattccttgtgctgagagtttaga |
318 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46656908 |
ccttatcgt-----ttttaccaaaccaaacctttttagcaactttctcataattaacctcgaaaagtattcaccaatattccttgtgctgagagtttaga |
46656814 |
T |
|
| Q |
319 |
ttctttgaattgatcaatagcttctttccatgcctttg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46656813 |
ttctttgaattgatcaatagcttctttccatgcctttg |
46656776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 41562457 - 41562317
Alignment:
| Q |
85 |
caatcctaaagcaagttcctttagttgtgaagaaggaatgtaagacaaactaccaaaacatgcatagatgacagagcaagctttatttcaaataaaaaac |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||| |||||| |||| |
|
|
| T |
41562457 |
caatcctaaagcaagttcctttagttgtgaagtaggaatgaaagataaactaccaaaacatgcatagatgacagaacaagctttgtttgaaataagaaac |
41562358 |
T |
|
| Q |
185 |
tttagacatttggtttcagaatcattgatgcatcccttatc |
225 |
Q |
| |
|
||||||||||||||||| ||||| | |||| |||||||||| |
|
|
| T |
41562357 |
tttagacatttggtttcggaatcgtcgatgaatcccttatc |
41562317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 280 - 356
Target Start/End: Complemental strand, 41562202 - 41562126
Alignment:
| Q |
280 |
aaaagtattcaccaatattccttgtgctgagagtttagattctttgaattgatcaatagcttctttccatgcctttg |
356 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41562202 |
aaaagtattcaccaatatcccttgtgctgagagttcagattctttgaattgatcaatagctcctttccatgcctttg |
41562126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 41562797 - 41562733
Alignment:
| Q |
25 |
tctccattggatcaacaacagcttcaacaccaatcctcacaccaatcttaagcacttgcacaatc |
89 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41562797 |
tctccattggatcaacaaaagcctcaacaccaatcctcacaccaatcttaagcacttgcacaatc |
41562733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 41562260 - 41562232
Alignment:
| Q |
242 |
accaaacctttttagcaactttctcataa |
270 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41562260 |
accaaacctttttagcaactttctcataa |
41562232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University